Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g0432 ATGGCTGTTTCTTCTCAAGAACCAAGTTGCGAGAGCCAAACTGACAGGTATCCTTTGCTCATGGAACGGCCAGAAAACTATGAGAATCATGAGCACATTGTTGACATAGTCAGTGCTAGTGATGCTTCCTCATCAAGCTCATCTGATGAAGATTCTGCTCATGTTTCAAATCCAACCCACCATGAAAATAGACCATTAACTGACGCTTGGGTCCCCATATCTCAATCTTCCCCATCTTCCTCCGATGTATCAGAGTCTAGGAATTCTTCAATCATAACCAGAGCTCATGGGCCAGGGCGTCGTCGCTGGAGTCCGTTTAATTCAGGGTTATGGATTTCCATTGAGATAGTTTTCACTACAAGCCTGATTGTTGCATCCATAGTAGTATTGTCCTTGTCAAGAGATGAGAAACCACAAACTCCGTTGTTTGCTTGGGTTGTGGGTTATGCAGCTGGATGTGCAGCAAGCCTTCCTATTCTTTTCTGGCGTTATCTTCGCCGCAACCATGATGCAGAGGAAAATCTCCCAGATGCGTCTACAAACACTTGGAATGGTCATACTATGGGTGCTTCAAATGCTAGGCTCAGTGTATTAGCAGACTACTATAAGATGGCCCTGGATTGCTTCTTTGCTGTGTGGTTTGTGGTTGGTAATGTATGGATTTTTGGAGGACACTCCTCTTTTACCGCAGCTCCAAATTTGTACAGGTTATGTATTGTGTTTCTTACCTTTAGCTGTATTGGATACGCTATGCCTTTCATTCTATGTGCAATGATATGCTGCTGCTTGCCTTGTATAATTTCAATTCTTGGCCATGGGGATCTGAGCCAAGTTAGAGGAGCCAGTGCAGAATCTATTAATGCTTTACCAACCTACAAATTCAAGTTGAAGAAAAATGGAAGTGGCAACAGTGGAGAAATTAGTTCTGGAGTTGAAGGTGGGGTTGTGGGAGCGGGAACAGAAAAGGAGCGCGCTATCTCAGGGGAAGATGCTGTTTGTTGCATTTGCTTGACAAGATATGCAGATGATGATGAGCTGAGGGAGCTGCCTTGCTCTCATTTCTTCCATAGTGAGTGTGTGGATAAATGGCTGAAGATCAATGCATCCTGTCCCCTCTGCAAATGCGAGGTTGGTGAGAATACTGGGAGTTTGCCATCTTCATCAAACTCCTCCCAGCAACGATGA 1185 0.4456 MAVSSQEPSCESQTDRYPLLMERPENYENHEHIVDIVSASDASSSSSSDEDSAHVSNPTHHENRPLTDAWVPISQSSPSSSDVSESRNSSIITRAHGPGRRRWSPFNSGLWISIEIVFTTSLIVASIVVLSLSRDEKPQTPLFAWVVGYAAGCAASLPILFWRYLRRNHDAEENLPDASTNTWNGHTMGASNARLSVLADYYKMALDCFFAVWFVVGNVWIFGGHSSFTAAPNLYRLCIVFLTFSCIGYAMPFILCAMICCCLPCIISILGHGDLSQVRGASAESINALPTYKFKLKKNGSGNSGEISSGVEGGVVGAGTEKERAISGEDAVCCICLTRYADDDELRELPCSHFFHSECVDKWLKINASCPLCKCEVGENTGSLPSSSNSSQQR* 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g0432 394 SMART ringv_2 332 374 IPR011016 GO:0008270
Vvi11g0432 394 MobiDBLite consensus disorder prediction 38 93 - -
Vvi11g0432 394 Pfam Ring finger domain 333 374 IPR001841 -
Vvi11g0432 394 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 317 388 IPR013083 -
Vvi11g0432 394 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 21 377 - -
Vvi11g0432 394 MobiDBLite consensus disorder prediction 1 100 - -
Vvi11g0432 394 SMART ring_2 333 373 IPR001841 -
Vvi11g0432 394 MobiDBLite consensus disorder prediction 21 35 - -
Vvi11g0432 394 FunFam E3 ubiquitin-protein ligase 316 383 - -
Vvi11g0432 394 ProSiteProfiles Zinc finger RING-type profile. 333 374 IPR001841 -
Vvi11g0432 394 SUPERFAMILY RING/U-box 326 385 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi11g0432 Vvi-Chr11 3758058 3760795 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi11g0432 14 381 C3H Transcription Factor Family AT1G80400 51.378 1.00e-132 385
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g0432 - - vvi:100264554 700.664