Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g0424 ATGTCCATGAAGTCAGCGCAGTCGTCTTACCGCGATCGAACGCAAGAGTTTCTGAACGTTGCCGAGAGGCTCAAGAAGTCATTCTCTTCGGCTGCGCCGAATGCGGTGACCAGTAGTGGCGCGAAGCCCGACGGAACGCGATCTTCGCTCGCTATTCAGAAGGAATTCAAAGACAGGGCTTCGCGGATTGGATATGGGATTCATCAGACCTCGCAGAAGCTCGCCAAGCTAGCGAAATTGGCAAAGAGGACATCAGTTTTTGATGATCCAACAATGGAGATCCAAGAATTGACAGCTGTTGTCAAGCAGGATATTACTGCACTAAATGCAGCTGTAGTGGACCTACAACTCCTTTGTAACTCCCAAAATGAAAGTGGCAACATCTCAAGCGACACAACCTCCCATTCAACAACAGTTGTAGATGACTTAAAAAATCGCTTGATGAGCGCGACAAAGGAGTTCAAAGATGTTCTCACCATGCGAACAGAGAATTTAAAGGTTCATGAGAACAGAAGGCAGTTGTTTTCTTCAACTGCTTCAAAAGAGTCCACAAATCCTTTTGTTCGCCAGCGTCCATTGGCTGCAAAATCAACTGCTACTGCATCATCATCCCCTCCTCCTTGGGCCAATGAATCTTCATCCTCATCTCCCCTCTTTCCAAGGAAACAGGGAAATGTGGAATCTCAACCATTGCTGCAGCAGCAGCAGCAACAACAACAGTTGGTTCCTCTGCAAGACAGTTACATGCAGAGCCGAGCTGAAGCTCTTCAAAATGTGGAGTCAACCATTCATGAGCTTAGCAACATCTTCACACAACTGGCTACTATGGTTTCACAGCAAGGAGAGCTTGCAATCAGGATTGATGAGAACATGGAGGATACACTGGCAAACGTGGAAGGAGCACAGGGACAACTGGTCCGGTACCTTAACAGCATATCATCCAATCGATGGTTGATGATCAAGATATTCTTTGTATTGATTGTATTTCTTATGATTTTCTTATTTTTTGTGGCATAA 1017 0.4572 MSMKSAQSSYRDRTQEFLNVAERLKKSFSSAAPNAVTSSGAKPDGTRSSLAIQKEFKDRASRIGYGIHQTSQKLAKLAKLAKRTSVFDDPTMEIQELTAVVKQDITALNAAVVDLQLLCNSQNESGNISSDTTSHSTTVVDDLKNRLMSATKEFKDVLTMRTENLKVHENRRQLFSSTASKESTNPFVRQRPLAAKSTATASSSPPPWANESSSSSPLFPRKQGNVESQPLLQQQQQQQQLVPLQDSYMQSRAEALQNVESTIHELSNIFTQLATMVSQQGELAIRIDENMEDTLANVEGAQGQLVRYLNSISSNRWLMIKIFFVLIVFLMIFLFFVA* 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g0424 338 SUPERFAMILY t-snare proteins 54 301 IPR010989 GO:0016020|GO:0016192
Vvi11g0424 338 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 246 308 IPR000727 -
Vvi11g0424 338 PANTHER SYNTAXIN 56 333 IPR045242 -
Vvi11g0424 338 MobiDBLite consensus disorder prediction 30 46 - -
Vvi11g0424 338 MobiDBLite consensus disorder prediction 171 233 - -
Vvi11g0424 338 SMART tSNARE_6 241 308 IPR000727 -
Vvi11g0424 338 Pfam SNARE domain 283 334 IPR000727 -
Vvi11g0424 338 MobiDBLite consensus disorder prediction 28 48 - -
Vvi11g0424 338 CDD SNARE_syntaxin5 249 333 - -
Vvi11g0424 338 ProSitePatterns Syntaxin / epimorphin family signature. 252 291 IPR006012 GO:0005484|GO:0006886|GO:0016020
Vvi11g0424 338 Gene3D - 51 301 - -
Vvi11g0424 338 Pfam Syntaxin-5 N-terminal, Sly1p-binding domain 8 26 IPR021538 -
Vvi11g0424 338 MobiDBLite consensus disorder prediction 169 233 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi11g0424 Vvi-Chr11 3667671 3671643 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi11g0424 1 338 SNARE and Associated Proteins AT3G24350 68.232 8.67e-155 437
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g0424 K08490 - vvi:100250972 563.148