Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g0415 ATGCCTGCTGATAATAGTAAAATGTGTAACAAATTCAACACCACAGAAGGCTGCAAATTTGGTGACAAATGTCATTTTGCCCATGGTAAATGGGAGCTTAGCAAGCCACTTGCTCCATATCATGATGATCCTCGAGCCATTGGATCCATCCCAGGCAGCTTAGCTGGTCGAATTGAATCGTCACCAATCGACCCTGTTGCTAGCTTTGGTGCCTCAGCCATTACCAAAATTAGCGTAGATGCATCATTGGTTGAAGCCATCATTGGGAAGGGCGGTGTGAACTCGAAGCAGATATGTAGCCAAACAGGGGCCAAACTTTCCATACGGGAGCATGATTCAGATCCAAATATGAGGAATATTGAACTGGAGAGGACTTTTGAACAGATAAAGGAAGCGAGTGCAATGGTAAGATAA 414 0.4444 MPADNSKMCNKFNTTEGCKFGDKCHFAHGKWELSKPLAPYHDDPRAIGSIPGSLAGRIESSPIDPVASFGASAITKISVDASLVEAIIGKGGVNSKQICSQTGAKLSIREHDSDPNMRNIELERTFEQIKEASAMVR* 138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g0415 137 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 9 30 IPR000571 GO:0046872
Vvi11g0415 137 Pfam KH domain 75 136 IPR004088 GO:0003723
Vvi11g0415 137 Gene3D K Homology domain, type 1 72 137 IPR036612 GO:0003723
Vvi11g0415 137 SMART kh_6 71 137 IPR004087 GO:0003676
Vvi11g0415 137 ProSiteProfiles Type-1 KH domain profile. 72 136 - -
Vvi11g0415 137 Gene3D - 5 35 - -
Vvi11g0415 137 ProSiteProfiles Zinc finger C3H1-type profile. 3 31 IPR000571 GO:0046872
Vvi11g0415 137 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 62 136 IPR036612 GO:0003723
Vvi11g0415 137 SUPERFAMILY CCCH zinc finger 5 34 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi11g0415 Vvi-Chr11 3571407 3571820 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vvi11g0415 KH_1 2.7e-10 CL0007
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g0415 - - vvi:100245220 244.588