Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g0410 ATGGCAGAACAAGTTGTGAAGACGAGTAATAAAACATTTAAGAACCAGGATGCAAGAAAAGTTTCTTCCAGTCCCAACAATCAATCTACATCTAGAAAACACCACAGGAAGGGGGAAAATCCCATTCGATTACCATTAGCTACAGAGCAGTCTCCAGATTTTGTATGTTCAAACTCATGGGTCTGTAAAAATTCTGCTTGTAGAGCGGTTCTATCCATAGAAGATACTTTTTGCAAGAGGTGCTCTTGCTGCATCTGTCACCGATTTGATGATAATAAGGACCCTAGTCTTTGGTTGGTATGCACATCAGAATCTAGTCATGAAGACTCCTGTGGGTTATCTTGCCACATTGATTGTGCCCTCCTGCGCAACAAGGTGGGGGTTGTTGATCTTGGGCAATTGATGCAGCTAGATGGGAGTTATTGCTGTGCAACTTGTGGCAAGGTTTCTGGGATACTTGGATGTTGGAAAAAGCAACTTCTCATAGCCAAGGATGCTCGCCGCGTGGATATCCTATGTCATAGGATATGGTTGAGTTACAGGCTTCTGGATGGTACTTCTAGGTTTAAGGAACTACATGAAATCATAAGAGATGCCAAGGCCAAACTTGAAACAGAGGTTGGCCCAGTTAATGGGGTTTCAGCTAAGATGGCACGGGGCATCGTGAGCAGACTCTCTATTGCAGGTGATGTGCAGAAACTGTGCTCTCTTGCAATTGAGAAAGCAGATGAATGGCTTGGCTCCGTTTCTAACAAGAATCCAAATTCCAGAGAGGATTCACTTCCTGCAGCTTGCAGATTCTTATTCGAAGAAGTGACTTCTTCTTCTATTGTAATTGTTTTGGTAGAACTGTCTGTTCTGTCACCTGATAATATTGAGGGCTATAAGCTCTGGTATTGCAAGAGCAGAGAAGAGACCCACCAGAAAGAGCCAATCTGTTTCATTCCAAAAACTCAGAGAAGGGTGTTAATATCCAACCTGCAGCCCTGCACCGAGTACAGCTTTCGGATAATCTCTTATACAAAATCTGGTGATTTGGGTCACTCAGAAGCAAAGTGCTTCACAAAGAGCGTGGAGATTATCTACAAGAGTTCCAACTCAACCATCATGCAGAATGGTGAAAAAGAGAATCCCCCGATTGAAGGAAACTCTTCTAGTGCTAAGAGAGAGCCAAAGAATACAACAGCTGCTGAATCTTCTCCTGACTTCAAGGTGCGAGAGCTTGGAAAGGTTTTGCGTATGGCTTGGGCTCAAGAGAAAGGCTCCTTAGATAAGTTTTGCAGGATGGACTTAGAAAAATGCTGTGGAGTAACGAAACTGGTTAAGCCTGAAAAAGCAGAAGAACATCAGTTGCCGTTGGTTTCACGTGAGCTCGACTTGAATGTTGTTTCAGTGCCTGATCTGAATGAAGTGCTTACCCCGCCAATAGAGTCCTTCAGAGATGAAGACAATGTATACTCTTTGGCGCGGGCTGTTGAGGCAGATGAAGATGATGTTTCTCATGATGTTGTGAGAGAGAAGAACTGTCTTGCAAGATCACATGGTAGTGGTGATTCACAGACCTGGACCCGTGGACTGGGTGGAGAAGTTCCGGATGTTGATTCCCGAGCAGGGTTGTGCAGGAAAAGAGCAGCAAGCACAAATGGAGAGGCACGCGACTGTGATAGCACTCTGATAAATGGTTCACCATTCCGAGTTGCCAACGGATCAGGTTGTTTGGATGAGAACTTTGAGTACTGTGTGAAGATCATCCGATGGCTGGAATGCGAGGGCCATATTAAGCAGGAATTTAGGTTGAAATTGCTGACGTGGTTTAGCTTGAGATCAACAGAGCAAGAACGCAGGGTAGTTAACACCTTTATTCAAACTCTAATTGACGACCCAAGCAGCTTGGCGGGGCAGTTGGTCGACTCCTTTTCAGACATTATCTCCAACAAGAGGCCACGGAATGGGTTCTGCAGTAAACTGTGGCACTGA 1977 0.4482 MAEQVVKTSNKTFKNQDARKVSSSPNNQSTSRKHHRKGENPIRLPLATEQSPDFVCSNSWVCKNSACRAVLSIEDTFCKRCSCCICHRFDDNKDPSLWLVCTSESSHEDSCGLSCHIDCALLRNKVGVVDLGQLMQLDGSYCCATCGKVSGILGCWKKQLLIAKDARRVDILCHRIWLSYRLLDGTSRFKELHEIIRDAKAKLETEVGPVNGVSAKMARGIVSRLSIAGDVQKLCSLAIEKADEWLGSVSNKNPNSREDSLPAACRFLFEEVTSSSIVIVLVELSVLSPDNIEGYKLWYCKSREETHQKEPICFIPKTQRRVLISNLQPCTEYSFRIISYTKSGDLGHSEAKCFTKSVEIIYKSSNSTIMQNGEKENPPIEGNSSSAKREPKNTTAAESSPDFKVRELGKVLRMAWAQEKGSLDKFCRMDLEKCCGVTKLVKPEKAEEHQLPLVSRELDLNVVSVPDLNEVLTPPIESFRDEDNVYSLARAVEADEDDVSHDVVREKNCLARSHGSGDSQTWTRGLGGEVPDVDSRAGLCRKRAASTNGEARDCDSTLINGSPFRVANGSGCLDENFEYCVKIIRWLECEGHIKQEFRLKLLTWFSLRSTEQERRVVNTFIQTLIDDPSSLAGQLVDSFSDIISNKRPRNGFCSKLWH* 659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g0410 658 Pfam Fibronectin type III domain 269 347 IPR003961 GO:0005515
Vvi11g0410 658 Pfam PHD - plant homeodomain finger protein 62 180 IPR032881 -
Vvi11g0410 658 MobiDBLite consensus disorder prediction 1 43 - -
Vvi11g0410 658 MobiDBLite consensus disorder prediction 1 29 - -
Vvi11g0410 658 MobiDBLite consensus disorder prediction 370 400 - -
Vvi11g0410 658 SUPERFAMILY Fibronectin type III 270 350 IPR036116 GO:0005515
Vvi11g0410 658 Gene3D Immunoglobulins 248 351 IPR013783 -
Vvi11g0410 658 ProSiteProfiles Fibronectin type-III domain profile. 261 360 IPR003961 GO:0005515
Vvi11g0410 658 CDD FN3 269 345 IPR003961 GO:0005515
Vvi11g0410 658 PANTHER VIN3-LIKE PROTEIN 2-RELATED 1 658 IPR044514 GO:0010048|GO:0040029
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi11g0410 Vvi-Chr11 3536280 3538825 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi11g0410 26 651 PHD Gene Family AT3G24440 47.031 0.0 531
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g0410 - - vvi:100256041 1335.86