Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g0406 ATGGCGAATAGAATGAAGGAAGATGAAAAAAATGAGAGAATTATTCGGGGTCTTTTGAAACTTCCTGAGAATCGCAGATGTATTAACTGCAACAGTCTGGGACCGCAATACGTGTGCACAAATTTCTGGACATTTGTTTGCACAACTTGTAGTGGGATACATCGAGAGTTCACACATCGAGTGAAGTCAGTATCAATGGCAAAATTTACTTCTCAAGAAGTCAGCTCTCTTCAACGAGGGGGAAATGAGCGTGTGAAGGAATTCTATTTTAAGGAATGGGATCCGCAGCGTCATTCTTTCCCTGATAGCAGTAATATTGAGAGACTTCGGGACTTCATCAAGCATGTTTATGTGGATAGAAGATATAGTGGTGAGAGAAGCTTTGACAAACCACCAAGGGTGAAGATGGGTGACAAGGAGGAACCTTATGAAAACAGAAAGATGGACAACTATCAGGGTGGATCACGAAGCCCACCATATGAAGATTCATATGATCGTCGTTACAGTGATCAGCGTAGTCCTGGTGGAAGAAGTGATGACAAAAATTTTAGATATGGCTATGATGGAAGAAGAAGTCCAGGAAGTGATTTAGAAAATAGGCAGCACGGTGATTATAGGAGAAGTCCTGTTCGTCCTGAGATAGTTAATGATTGGCGTCGTGAGGATAGATTTGGGAATGGAAGGAAATCTGATAGAGAAACTAATCGGGAAGGCAGGTCACCTGACCATCAGAAGGATCTGGATGCATCCAGTCCTCCAATGGTACGCCCTGTTAGAGAGATTTTAGGGGATAATGTATCACCCTTACGGGTTATTGAACCTCCAAAGGCCAATGGTGGCAGGGTCGGTGATGGTTTTGCACGTACGCAGAGAACCGCTTCATCCAGTAGCTTGGGATCCTCTAATGGAAATCCAGGGGAACTAAAAAGGGAGAATTCAGGAATCTTAATTGATTTTGATGCTGATCCTGAACCTCCTGTTGCTGCAACAGTGCCACAAACACAACAACCACCAGTTCAAACCATCGCACAACCGATAAGTTCATCCAATGATAACTGGGCCTCTTTTGATTTTGCCACAGAAGCAAAAGTATCCCAAGCTCCTTCAAATGTGAATGCCCTGGAAACAGTACTTTCACAATTGTCAGTTCCAGCATCTGTTCCTGGGCACGGATCAGGAGTACCCAATAGTGGTGGTGCTCCAACAGCTGTACCAGTGGGCAATGTGTCAGTGTTGCCAATGAGTGGTGATTCCCTATTTCCACCAGTACGGCCCATCCCTACGTCACCGTTTCTTGGTGGTGCTCCTGCACCAGTCAATACTTTTGCTGCATTTCCTCCAGCTGCTGCCGCTGCAGCTGCTCCTGGATTGACACCAATGTTACATGGGCATGATGGTAATTCCTTTGTCAAAGTTACTGGTGCAGGACAATGGCCAAGCATGCAGTATCAACAACATTCTTTATTCCCTGATACTGGAAGTCAGTCTATCGCTCAACAATTTGCTCCATCAGTTGGTGGAACTTCAACCAATCAGCAGTGGAATTCACCACTTTTGCCAAATACACAAGGGCCTTTTAGTGCTCCTGCAGCACAAGCACCTCAAACTGTCTCAAAACCTCAGGTGGTTGCTTCTAGTCTTTCATCACCACCTCTCCCTGTGGAAGTAAAACCAGCTGGAAGAAAAGAATTGCCATTGGATCTTTTCGCTGCAACCTATCAACCCATCTCTATGCAAGTTCCAGGTTGGCAAACTGGTCCACCCCATGGCATGGGGTTCCACCTGCAATATAATACTGCAGCGCCATTGCCATCAACATTCTCACATTCATCAAAATCAACAAACCCATTTGATCTCAACAATGAACCACCTCCGGCTCAAGCTCCAACATTTCCTTCCATGGCGTCCTTGCAAGGGAGTCTACCAAATATGCCCCCTTCTATGGGCTTGCTGCATTCTTCCAGTGCTGGTACTCAATCAACATGGACACCACCCCAGTCATCATTATATCCATTGGCAATGCCTCCACAAGCACCACCTTATGTGTCGGGAATGCCTCCACAAGTACCGCCTTATGCGTCGGGAATGCCTCCAAGAGCATACATGGGGCAACAAGTACCTGGTGCCATTCCACCTTCCAGTCATCAAGGAGTGGGAAGCTTTGGCAGTGAGGATGCTGCTTTTAGCTCTTTGAATCCAAATCATCTAATTGGTGGAAGATCCTCTGCACCTGCTGCCTTAGATAAGCTTTCTTCTGTTGGAGGAAATCCATTTGGATAA 2280 0.4583 MANRMKEDEKNERIIRGLLKLPENRRCINCNSLGPQYVCTNFWTFVCTTCSGIHREFTHRVKSVSMAKFTSQEVSSLQRGGNERVKEFYFKEWDPQRHSFPDSSNIERLRDFIKHVYVDRRYSGERSFDKPPRVKMGDKEEPYENRKMDNYQGGSRSPPYEDSYDRRYSDQRSPGGRSDDKNFRYGYDGRRSPGSDLENRQHGDYRRSPVRPEIVNDWRREDRFGNGRKSDRETNREGRSPDHQKDLDASSPPMVRPVREILGDNVSPLRVIEPPKANGGRVGDGFARTQRTASSSSLGSSNGNPGELKRENSGILIDFDADPEPPVAATVPQTQQPPVQTIAQPISSSNDNWASFDFATEAKVSQAPSNVNALETVLSQLSVPASVPGHGSGVPNSGGAPTAVPVGNVSVLPMSGDSLFPPVRPIPTSPFLGGAPAPVNTFAAFPPAAAAAAAPGLTPMLHGHDGNSFVKVTGAGQWPSMQYQQHSLFPDTGSQSIAQQFAPSVGGTSTNQQWNSPLLPNTQGPFSAPAAQAPQTVSKPQVVASSLSSPPLPVEVKPAGRKELPLDLFAATYQPISMQVPGWQTGPPHGMGFHLQYNTAAPLPSTFSHSSKSTNPFDLNNEPPPAQAPTFPSMASLQGSLPNMPPSMGLLHSSSAGTQSTWTPPQSSLYPLAMPPQAPPYVSGMPPQVPPYASGMPPRAYMGQQVPGAIPPSSHQGVGSFGSEDAAFSSLNPNHLIGGRSSAPAALDKLSSVGGNPFG* 760
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g0406 759 Gene3D Arf GTPase activating protein 1 130 IPR038508 -
Vvi11g0406 759 SMART arf_gap_3 12 130 IPR001164 GO:0005096
Vvi11g0406 759 MobiDBLite consensus disorder prediction 515 548 - -
Vvi11g0406 759 MobiDBLite consensus disorder prediction 288 308 - -
Vvi11g0406 759 ProSiteProfiles ARF GTPase-activating proteins domain profile. 12 130 IPR001164 GO:0005096
Vvi11g0406 759 SUPERFAMILY ArfGap/RecO-like zinc finger 11 123 IPR037278 -
Vvi11g0406 759 MobiDBLite consensus disorder prediction 515 556 - -
Vvi11g0406 759 MobiDBLite consensus disorder prediction 127 147 - -
Vvi11g0406 759 MobiDBLite consensus disorder prediction 604 621 - -
Vvi11g0406 759 MobiDBLite consensus disorder prediction 127 255 - -
Vvi11g0406 759 Pfam Putative GTPase activating protein for Arf 13 123 IPR001164 GO:0005096
Vvi11g0406 759 MobiDBLite consensus disorder prediction 604 629 - -
Vvi11g0406 759 CDD ArfGap_AGFG 12 122 - -
Vvi11g0406 759 PANTHER ARFGAP/RECO-RELATED 1 759 IPR044820 GO:0005096
Vvi11g0406 759 MobiDBLite consensus disorder prediction 270 310 - -
Vvi11g0406 759 PRINTS HIV Rev interacting protein signature 43 60 IPR001164 GO:0005096
Vvi11g0406 759 PRINTS HIV Rev interacting protein signature 61 82 IPR001164 GO:0005096
Vvi11g0406 759 PRINTS HIV Rev interacting protein signature 24 43 IPR001164 GO:0005096
Vvi11g0406 759 MobiDBLite consensus disorder prediction 160 246 - -
Vvi11g0406 759 FunFam Arf-GAP domain and FG repeat-containing protein 1 1 135 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi11g0406 Vvi-Chr11 3486213 3493115 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi11g0406 15 174 C2H2 Transcription Factor Family AT3G07940 30.409 1.27e-11 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g0406 - - vvi:100249171 1490.32