Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g0404 ATGAAGAAGAAGACCCATCTCCTCCATTTTGTTCTTCTTCACTCTCTCCTCTTCTTGGGCTGCCTCGCTCTCTGTTCTGCGGAGCAGATCTCTATTTCCAGCCATGGCCACCTCACTGACGCGGAAGTTATGTACATTAAGCGGCGTCAACTTCTGTACTACAGAGACGAGTTTGGTGACAGAGGGGAGGATGTGACTGTGGATCCTTCTCTGGTGTTTGAGAACCCTAGGCAGAGGAACGCCTACATTGCGTTGCAAGCTTGGAAACAGGCCATTCTATCTGATCCTCTTAATCTTACGCTCAACTGGGTTGGATCTAATGTGTGTAACTACACCGGGGTTTACTGCGCACAAGCTCCGGACAATTCGTCCATCCGTACCGTCGCCGGCATTGATCTCAACCATGGAGACATCGCCGGGTACTTGCCGGAGGAGCTAGGTCTGCTAACTGATCTTGCATTGTTCCACATCAACTCCAACCGCTTCTGTGGGACTGTTCCGCATAAGTTTGCGAAGCTCAAGATACTGTTTGAATTGGATCTCAGCAACAATAGGTTCGCCGGGAAGTTCCCGGAAGTGGTGCTTCACTTGCCAACGCTGAAATTCTTAGATCTGCGATTCAATGAGTTTGAAGGAACCGTGCCGAAGGAGCTGTTTGATAAGGATTTGGACGCCATTTTCATCAACCACAACAGGTTCGCCTTCGATCTGCCTGACAACTTCGGTAACTCGCCGGTGTCGGTGATAGTTGTAGCGAACAACAAGCTCCACGGCTGCGTGCCGGCGAGTCTGGGCAACATGGCGGACACGCTGAATGAGATAATTCTGATGAATAATCAGTTCCGATCGTGCTTGCCTGTTGAGATCGGATTGTTGAAGAATTTAACTGTGTTGGATGTCAGTTACAATGGATTGTTGGGACCGTTGCCGAAAGAGATTGGTGGAATGGTGGAGCTTGAGCAGCTCAATGTGGCTCACAATATGCTCTCTGGGAGTATTCCTGCCAGTATTTGTAAGCTTCCAAATCTTGAAAATTTTACATTTTCATATAATTTCTTCACCGGCGAGCCACCGGCATGTTTGGGTTTGGCGGATTTCGAAGATAGGAGGAATTGCTTGCCAGGGAGGCCGGAGCAGAGGTCCGCCGGGCAATGTAACTCGTTTTTGTCCCGACCTGTTGATTGTAGCTCTTTCAGGTGTTCTCCTTTTGTTCCTTCTTTACCTACTCCCCCACCACCCTCACCACCGGTGTTCCCCTCTCCACCCCCGACACCGGTTTACTCACCTCCACCGGTGTTCTCGCCTCCGCCACCGGTGCTCTCTTCCCCACCACCACCATCACCGCCACCGCCATCTCCTTCGCCTCCACCACCTCCAGTTTACTCCCCTCCTCCACCTCCACCAGTTTACTCACCTCCACCACCCCCTCCTCCCCCACCGCCACCACCACCTGTTTATTTTCCGCCACCACCTCCACCTTCACCACCACCACCGTCTCCCCCTCCACCCTCACCCCCACCACCTTCTCCATCACCGCCTCCCCCTCCCTCGCCACCACCACCGGTATTATCGCCCCCGCCTCCAGTTTATTGCGTCCGTTCCCCACCACCGCCACCGCCAAATTCTCCCCCGCCTCCCATTTATTCTCCACCACCACCTCCAGTTCATTCACCGCCCCCACCAAGTCCTTACTATAGTTCACCACCGCCCCCGCCGCCACATCATTCACCTCCACCACCTCCCCACTCGCCACCCCCGCCTCCACCTATCTATCCATACGCATCACCGCCACCGCCACCCGTGCATTCCCCACCACCACCTGTCCATTCTCCACCACCTCCATGCATAGAACCGCCTCCTCCTTCTCCACCACCCCCATCACCACCTCCATGCATAGAACCGCCTCCTCCTCCTTCTCCACCACCATGTGTAGAATATTCGCCACCTCCACCATCACCACACTCACCACCGCCACCACCAGTTCATTACTTGCCTCCACCATCACCATCACCCCCACCACCACCTGTGTATGCTTCTCCGCCACCTCCACCATCTCTGCCTCCCCCAGTTTACTACCATTCTCCGCCCCCACCCTCACCACCTCCTCCAACCCCATGTGAAAATCCTCCACCTACTCCATCACCACCGCCCCCAATCATTTATGAGAGCCCACCACCTCCAACCCCTGTATATGAGGGGCCATTGCCACCAATCTTTGGAGTTTCATACGCTTCTCCACCGCCACCACCCTTCTATTGA 2259 0.544 MKKKTHLLHFVLLHSLLFLGCLALCSAEQISISSHGHLTDAEVMYIKRRQLLYYRDEFGDRGEDVTVDPSLVFENPRQRNAYIALQAWKQAILSDPLNLTLNWVGSNVCNYTGVYCAQAPDNSSIRTVAGIDLNHGDIAGYLPEELGLLTDLALFHINSNRFCGTVPHKFAKLKILFELDLSNNRFAGKFPEVVLHLPTLKFLDLRFNEFEGTVPKELFDKDLDAIFINHNRFAFDLPDNFGNSPVSVIVVANNKLHGCVPASLGNMADTLNEIILMNNQFRSCLPVEIGLLKNLTVLDVSYNGLLGPLPKEIGGMVELEQLNVAHNMLSGSIPASICKLPNLENFTFSYNFFTGEPPACLGLADFEDRRNCLPGRPEQRSAGQCNSFLSRPVDCSSFRCSPFVPSLPTPPPPSPPVFPSPPPTPVYSPPPVFSPPPPVLSSPPPPSPPPPSPSPPPPPVYSPPPPPPVYSPPPPPPPPPPPPPVYFPPPPPPSPPPPSPPPPSPPPPSPSPPPPPSPPPPVLSPPPPVYCVRSPPPPPPNSPPPPIYSPPPPPVHSPPPPSPYYSSPPPPPPHHSPPPPPHSPPPPPPIYPYASPPPPPVHSPPPPVHSPPPPCIEPPPPSPPPPSPPPCIEPPPPPSPPPCVEYSPPPPSPHSPPPPPVHYLPPPSPSPPPPPVYASPPPPPSLPPPVYYHSPPPPSPPPPTPCENPPPTPSPPPPIIYESPPPPTPVYEGPLPPIFGVSYASPPPPPFY* 753
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g0404 752 PRINTS Proline rich extensin signature 408 424 - -
Vvi11g0404 752 PRINTS Proline rich extensin signature 434 446 - -
Vvi11g0404 752 PRINTS Proline rich extensin signature 446 467 - -
Vvi11g0404 752 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 18 527 - -
Vvi11g0404 752 Gene3D Ribonuclease Inhibitor 80 371 IPR032675 -
Vvi11g0404 752 MobiDBLite consensus disorder prediction 435 586 - -
Vvi11g0404 752 MobiDBLite consensus disorder prediction 693 738 - -
Vvi11g0404 752 FunFam Leucine-rich repeat extensin-like protein 5 244 384 - -
Vvi11g0404 752 MobiDBLite consensus disorder prediction 599 680 - -
Vvi11g0404 752 Pfam Leucine rich repeat 153 209 IPR001611 GO:0005515
Vvi11g0404 752 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 21 - -
Vvi11g0404 752 SUPERFAMILY L domain-like 83 360 - -
Vvi11g0404 752 FunFam Leucine-rich repeat extensin-like protein 1 82 243 - -
Vvi11g0404 752 Pfam Leucine rich repeat N-terminal domain 84 116 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi11g0404 Vvi-Chr11 3457715 3459973 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi11g0404 30 454 Leucine-rich Repeat extension Gene Families AT3G24480 70.423 0.0 622
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g0404 - - vvi:100259389 793.882