Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g0401 ATGGCGCCCTCTACAGAATCGGTCGTCCATGTGAATTTCTCCAACCCCAGAAGCTTTGCCAACAAGTTCAGGTCCCACCTCAAGGAGACCTTCTTCCCCGATGATCCCTTCCGGCAGTTCAGAAACGAACCGCCGCTGCGGCGCACGAAGAAAGCTTTACAATACTTTGTTCCCATCTTTGAATGGCTGCCCAAATACACTTTCAGCATGTTCAAGTATGACGTCCTCGCCGGAATCACCATTGCCAGCCTCGCCATCCCGCAGGGCATCAGCTACGCTAAACTCGCTGAAATCCCTCCCATTATAGGCCTCTATTCGAGTTTTGTTCCACCGTTGGTTTATGCTGTTTTTGGGAGCTCCAGGAGTATGGCAGTGGGAACAGTGGCGGCGGTGTCGTTGCTTATAGCCTCTACCATCGGAGATGTGGTGTCTCCGACGGATGATCCGACATTGTTTCTGCATTTAGTTTTCACAGCCACCTTCATCACAGGGATCTTTCAGACAGCCTTGGGTCTTTTACGACTCGGGATTTTGGTGGATTTCTTATCGCATTCCACTATCACCGGCTTCATGGGAGGGACCGCAACCATCATCTGTCTGCAACAGCTCAAGGGTTTTCTTGGATTGAGCCATTTCACTACTAAAACTGATGTTGTCTCAGTTGTGAGGGCAATCTTCAGCCATAGGAATGAGTGGAGATGGGAAAGTGCAGTTATGGGAGTCTGCTTCCTTCTCTTCCTCCTCTTCACTGTGCAGCTGAGAAAGAGACTGCCGCGGCTGTTTTGGGTGTCAGCAGTGGCTCCAATCGTGACGGTGTTAATTGGCTGCATTATTGCTTACTTCCTTCGCGGCCATGATGCAATCCAAACAGTTGGTCACTTAAAGAAAGGATTAAATCCTCTTTCCATCGGATATTTGAATTTCAACCCTAAGTATCTAACAGCAGTTGTAAAAGCTGGGATCATCACAGCCATCTTAGGACTAGCGGAAGGGATAGCAATAGGGAGGAGCTTTGCGATAATGAAAAACGAGCAAACTGATGGAAACAAAGAGATGATAGCTTTTGGGCTGATGAACATTGTTGGGTCTTTTACTTCTTGCTATTTGACTACAGGCCCATTTTCAAAATCTGCAGTGAACTTCAATGCTGGGTGTAGGTCAGCAATGTCCAATGTGGTGATGGCATTCTGTATGATGCTGACTCTCCTCTTCTTGGCTCCTGTCTTTAGTTACACTCCTCTGGTAGCTCTCTCTGCCATTATCACCTCAGCCATGCTTGGACTCATCAAGTACGATGAGGCCTATCATCTCTTCAAGGTCGACAAGTTTGATTTCTGTATCTGCATGGCTGCGTTTTTGGGAGTTACCTTCGTTACAATGGATGTAGGCCTCATGCTCTCGGTAGGGCTTTCAATTGTGAGAGCACTTCTATATGTGGCCAGGCCTGCCACAGTCAAGCTTGGAAACATACCAAACTCCACGCTCTACCGTGACGTAGAGCAGTATCCGGCTGCAACGTCGTTCCCAGGCGTCCTAGTCCTGCAACTGGGCTCCCCGATTCACTTTGCCAACTCCACTTACATCAGAGAACGGTACTTGTAG 1602 0.4838 MAPSTESVVHVNFSNPRSFANKFRSHLKETFFPDDPFRQFRNEPPLRRTKKALQYFVPIFEWLPKYTFSMFKYDVLAGITIASLAIPQGISYAKLAEIPPIIGLYSSFVPPLVYAVFGSSRSMAVGTVAAVSLLIASTIGDVVSPTDDPTLFLHLVFTATFITGIFQTALGLLRLGILVDFLSHSTITGFMGGTATIICLQQLKGFLGLSHFTTKTDVVSVVRAIFSHRNEWRWESAVMGVCFLLFLLFTVQLRKRLPRLFWVSAVAPIVTVLIGCIIAYFLRGHDAIQTVGHLKKGLNPLSIGYLNFNPKYLTAVVKAGIITAILGLAEGIAIGRSFAIMKNEQTDGNKEMIAFGLMNIVGSFTSCYLTTGPFSKSAVNFNAGCRSAMSNVVMAFCMMLTLLFLAPVFSYTPLVALSAIITSAMLGLIKYDEAYHLFKVDKFDFCICMAAFLGVTFVTMDVGLMLSVGLSIVRALLYVARPATVKLGNIPNSTLYRDVEQYPAATSFPGVLVLQLGSPIHFANSTYIRERYL* 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g0401 533 PANTHER SULFATE TRANSPORTER 17 532 IPR001902 GO:0016020|GO:0055085
Vvi11g0401 533 ProSiteProfiles STAS domain profile. 501 533 IPR002645 -
Vvi11g0401 533 ProSitePatterns SLC26A transporters signature. 100 121 IPR018045 GO:0008271|GO:0008272
Vvi11g0401 533 NCBIfam sulfate permease 58 531 IPR001902 GO:0016020|GO:0055085
Vvi11g0401 533 Gene3D STAS domain 481 533 IPR036513 -
Vvi11g0401 533 Pfam Sulfate permease family 71 451 IPR011547 GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi11g0401 Vvi-Chr11 3394759 3397754 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi11g0401 11 533 Inorganic Solute Cotransporters AT5G19600 70.476 0.0 751
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g0401 K17471 - vvi:100257654 1048.5