Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g0400 ATGGCTGGAGCAGCAGTTATTGTGTCCTTGCAGCAGCTAAAAGGATTGCTTGGGATTGTTCACTTCACTAAAAAAATGCAGATCATCCCTGTAATGTCCTCTGTTTTCGGCCACACAAAAGAGTGGTCCTGGAAAACCATTGTGTTAGGTTTCGGTTTCCTAATATTTCTACTAACAGCAAGGTTGACTAGCTTGAAGAGACCAAAGCTTTTCTGGATTTCAGCAGCAGCTCCATTAACTTCTGTTATTCTGTCAACTCTTTTAGTCTACCTACTCAAATCTGAACTTCATGGTGTTTCAGTGATTGGTGAATTGCCAGATGGTCTGAACCCACCTTCAGCAAACATACTATATTTCCATGGCCCTCATCTAGGCCTTGCTATCAAAGCAGGCATTGTGACAGGGATATTATCACTCACTGAAGGAATTGCAGTGGGAAGAACATTTGCTTCTCTGCAAAATTATCAAGTTGATGGAAACAAAGAGATGATGGCAATTGGTCTAATGAATATGGTTGGTTCTTGCTCATCATGCTATGTTACTACAGGGTCATTCTCCCGATCTGCTGTAAACTACAATGCTGGAGCAAAAACAGCCTTTTCAAACATAGTGATGGCAGGAGCAGTGCTTGTGACACTGCTATTTCTCATGCCACTGTTCTATCACACTCCAAATTTAGTCTTAGCAGCGATCATCATTACTGCAGTGATTGGGTTGATAGACTACAATGCTGCATTTCTGTTGTGGAAGCTTGACAAGCTTGAGTTTTTGGCCTGCTTGTGCTCTTTCTTTGGTGTCTTATTTATCTCTGTGCCAATGGGTCTCGCCATTTCTGTTGGAGTTTCAGTATTCAAGATTCTCCTGCATGTTACCAGGCCTAACACCGTGGCATTGGGGAATATCCCCGGTACTCAAATATACCAAAATGTCAGTCGCTATGAGAATGCTTCAAGAGTTCCATGCTTCCTCATCCTAGGCATTGAATCTCCCATCTATTTTGCAAATTCAACTTATCTTCAAGAAAGGATATTAAGATGGGTTTGGGAAGAGGAAGAGAGGCTTAAAGAAAAGGAGGAGAATCTGAAATGTGTGGTTTTGGATATGACAGCAGTGACAGCCATAGATAGCAGCGGTATTGATGCTATATATGAACTTAGAAAGACACTGCTGAATAGATCAGTTCAGCTGGTGTTGGTAAATCCTGTTGGAAGCGTAATGGAAAAGCTCCATCACTCAAAAATCCTTGATTTGTTTGGAACAAACCAACTTTATTTGACAGTTGGAGAGGCAGTAACTGACATATCATCTTCATGGAAGGCTTAG 1323 0.415 MAGAAVIVSLQQLKGLLGIVHFTKKMQIIPVMSSVFGHTKEWSWKTIVLGFGFLIFLLTARLTSLKRPKLFWISAAAPLTSVILSTLLVYLLKSELHGVSVIGELPDGLNPPSANILYFHGPHLGLAIKAGIVTGILSLTEGIAVGRTFASLQNYQVDGNKEMMAIGLMNMVGSCSSCYVTTGSFSRSAVNYNAGAKTAFSNIVMAGAVLVTLLFLMPLFYHTPNLVLAAIIITAVIGLIDYNAAFLLWKLDKLEFLACLCSFFGVLFISVPMGLAISVGVSVFKILLHVTRPNTVALGNIPGTQIYQNVSRYENASRVPCFLILGIESPIYFANSTYLQERILRWVWEEEERLKEKEENLKCVVLDMTAVTAIDSSGIDAIYELRKTLLNRSVQLVLVNPVGSVMEKLHHSKILDLFGTNQLYLTVGEAVTDISSSWKA* 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g0400 440 ProSiteProfiles STAS domain profile. 312 434 IPR002645 -
Vvi11g0400 440 NCBIfam sulfate permease 1 430 IPR001902 GO:0016020|GO:0055085
Vvi11g0400 440 CDD STAS_SulP_like_sulfate_transporter 313 427 - -
Vvi11g0400 440 Gene3D STAS domain 292 436 IPR036513 -
Vvi11g0400 440 Pfam STAS domain 313 430 IPR002645 -
Vvi11g0400 440 SUPERFAMILY SpoIIaa-like 320 432 IPR036513 -
Vvi11g0400 440 Pfam Sulfate permease family 1 260 IPR011547 GO:0016020
Vvi11g0400 440 PANTHER SULFATE TRANSPORTER 1 434 IPR001902 GO:0016020|GO:0055085
Vvi11g0400 440 FunFam Sulfate transporter 31 292 437 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi11g0400 Vvi-Chr11 3381792 3384256 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi11g0400 2 440 Inorganic Solute Cotransporters AT3G15990 75.909 0.0 697
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g0400 K17471 - vvi:100262777 834.328