Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g0398 ATGGACGATACTGAAGATGATGCTGGGTACCCTCCGAAACGGTACTCCGTCAATCACCATTCCTCCTTCAATACGGCGCCGTCTTCCAACCGCCAGAAGCTTCCCGTGCGAAACGCCTCGTATGCCCTTCAAGTCCCACCTCAATACGACGTCGTAGATGAGGAGGAGGACGACGAAGACAACGCCCAAGAAGAGGATGAATTGGACGAAGACGATGACGAGGAAGACGACGACGAGGACGACGATGTTATTGAACCCGCGGGAGACTCGGGGTTGAATCCGAAGAAGCGGAAGCTGAGGGATTTGGTTAACAATTACGAGTTCGCCCCACGTGTGGTGCCGCCGCCGACCTCGAGGTTGCCGTTCGGCGGACGGAATTCGTCGGCGGAGTGGACGGAGCACGAGACTTTCTTGTTGTTGGAGGCGTGGGGAGAGAGGTTTGTTCAGCTTGGGAGGAAGAGTTTGAGGTCTGATGATTGGGCCGATGTTGCAGAGAAGGTCTCGGAGGGTTCCAAGATTGAACGAACGGATATGCAGTGTAGAAATCGATTGGATACGTTGAAGAAGAAGTACAAGAAGGAGAGGGCTAAAGTGGAGGAAATGGGAGGTGGGAATAGCAAATGGGTTTTCTACAAGAAGATGGATGCGTTAATGGGGTTGTCGCCAACTCCAAGTCGGCAACAGTATGGGCTTGCTTGTGGGGTTGATTCCGGGGAATACGTGTTTATGAATCCCCGAGTTTATTTGAATAGGTCGAACGGATTGGATGAGATGAGGGATAGCCCTGGGAATTCGGAGTATGGTGATGATGATTCAGAGGGCCTTCCTCTGAAGAGGACTAACCCGGGAGGGGACGATGAGGAGGGATCTTCAATTAGGTTGTTGGCAGATTCAATTGAGAAGTTTGGTGAGATTTACGAGAAGATTGAGAAGACCAAGAGGCAGCAGATGATGGAGTTGGAGAAGATGAGGATGGATTTTCATAGAGAATTGGAGTTGCGTAGGAAGGAGATGCTAGAGAGAACTCAGGCAGAGATTGCAAAAATACGGCAAGGGGATGATGAAGACACTGATGCTTCAGATGAGAACTACAGTGGTTGA 1101 0.5068 MDDTEDDAGYPPKRYSVNHHSSFNTAPSSNRQKLPVRNASYALQVPPQYDVVDEEEDDEDNAQEEDELDEDDDEEDDDEDDDVIEPAGDSGLNPKKRKLRDLVNNYEFAPRVVPPPTSRLPFGGRNSSAEWTEHETFLLLEAWGERFVQLGRKSLRSDDWADVAEKVSEGSKIERTDMQCRNRLDTLKKKYKKERAKVEEMGGGNSKWVFYKKMDALMGLSPTPSRQQYGLACGVDSGEYVFMNPRVYLNRSNGLDEMRDSPGNSEYGDDDSEGLPLKRTNPGGDDEEGSSIRLLADSIEKFGEIYEKIEKTKRQQMMELEKMRMDFHRELELRRKEMLERTQAEIAKIRQGDDEDTDASDENYSG* 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g0398 366 CDD SANT 130 183 IPR001005 -
Vvi11g0398 366 Coils Coil 306 326 - -
Vvi11g0398 366 MobiDBLite consensus disorder prediction 253 291 - -
Vvi11g0398 366 MobiDBLite consensus disorder prediction 262 291 - -
Vvi11g0398 366 MobiDBLite consensus disorder prediction 346 366 - -
Vvi11g0398 366 MobiDBLite consensus disorder prediction 50 86 - -
Vvi11g0398 366 Gene3D - 131 193 - -
Vvi11g0398 366 MobiDBLite consensus disorder prediction 17 37 - -
Vvi11g0398 366 ProSiteProfiles Myb-like domain profile. 123 188 IPR001005 -
Vvi11g0398 366 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASIL2 123 354 IPR044823 -
Vvi11g0398 366 FunFam trihelix transcription factor ASIL2 131 193 - -
Vvi11g0398 366 Coils Coil 181 201 - -
Vvi11g0398 366 MobiDBLite consensus disorder prediction 1 99 - -
Vvi11g0398 366 Pfam Myb/SANT-like DNA-binding domain 129 217 IPR044822 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi11g0398 Vvi-Chr11 3376829 3377929 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi11g0398 286 351 Trihelix Transcription Factor Family AT3G14180 45.455 5.98e-11 61.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Vvi11g0398 Myb_DNA-bind_4 1.1e-22 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g0398 - - vvi:100245606 671.389