Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g0393 ATGCCAAACAGATTTCCAGGAGCCTTGAGCCAGGATTGGGAGCCAGTGGTTCTCCACAAGTCGAAGCCCAAAGCGCAAGAGCTTCGTGATCCAAAGGCCGTGAACAAGGCTATCCGGTCAGGCGCGCCAGTCCAGACCTTGAAGAAGTTCGATGGCGGTGCGAACAAGAAGGCGGCTCCGATCATGAACACGAGGAAGCTGGATGAAGGAACGGAGCCGGCGGCTTTGGACAGGGTATCGGTGGATGTGAGACAGTTGATACAGAAAGCGAGGTTGGAGAAGAAGATGAGCCAAGCGGAGCTGGCTAAGCTGATAAACGAGAGGCCTCAGGTGGTTCAGGAGTACGAGAACGGTAAGGCAGTGCCGAACCAGGCGGTGCTTGCGAAGATGGAGAAGGTTCTAGGTGTCAAGCTTAGAGGAAAGATCAGCAAGTGA 435 0.5471 MPNRFPGALSQDWEPVVLHKSKPKAQELRDPKAVNKAIRSGAPVQTLKKFDGGANKKAAPIMNTRKLDEGTEPAALDRVSVDVRQLIQKARLEKKMSQAELAKLINERPQVVQEYENGKAVPNQAVLAKMEKVLGVKLRGKISK* 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g0393 144 Coils Coil 87 107 - -
Vvi11g0393 144 PANTHER ENDOTHELIAL DIFFERENTIATION-RELATED FACTOR 1 MULTIPROTEIN BRIDGING FACTOR 1 11 141 - -
Vvi11g0393 144 FunFam Multiprotein bridging factor 1 71 144 - -
Vvi11g0393 144 SUPERFAMILY lambda repressor-like DNA-binding domains 81 138 IPR010982 GO:0003677
Vvi11g0393 144 Pfam Helix-turn-helix 87 138 IPR001387 -
Vvi11g0393 144 Pfam Multiprotein bridging factor 1 11 79 IPR013729 -
Vvi11g0393 144 Gene3D - 70 144 IPR010982 GO:0003677
Vvi11g0393 144 ProSiteProfiles Cro/C1-type HTH domain profile. 87 141 IPR001387 -
Vvi11g0393 144 SMART mbf_short4 86 141 IPR001387 -
Vvi11g0393 144 CDD HTH_XRE 85 138 IPR001387 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi11g0393 Vvi-Chr11 3340783 3341217 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR MBF1 Vvi11g0393 MBF1 4.9e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g0393 K03627 - vvi:100249249 282.337