Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g0390 ATGCCAGATTTGAGAAGTGGAGTTCGCCGATCAAAGAGAATCAACGATATCCAAGAAAATGCTGCCGCTTTAGTTCCTGCTACCCGGCGTGGTGCTGGAAGAGGTGATGACTCGAAAGCTCAAGCCATAAAATCACCTTCACCAAAGCCATATAATCCAGCATTTTTTTATCCAAGGCCAAGGCCAGCTGGAAGAGGTAGAGGGGCTAGAGCAATGAATCAAGATAAGAATGGCAAGCTTTTTGGTACTGGAGTTGGTGGCCGGGGGCGTGTAGGCTTGGATTTGGCTGCTAGAGAGGTGGTCACCATTCCAGATGAAGTGGTTGCGGAGAAGGGTGCAGAAAAGTTGGCTGCTGTGGAGGAGGAAGGAAGCGCAAGTCCACTTCCTGAGAAGGTACAGATTTCCAATTCCCCTATGTACAAGCTAGACAGAAAGCTGGGTAAAGGGGGTTTTGGGCAAGTTTATGTTGGAAGAAGGGTAACTGGTGGCACAGGGCGCACTGGACCTGATGCTTTTGAGGTTGCTCTAAAGCTTGAGCATCGGAATGGTAAAGGCTGCAGTTATGGCCCACCTTATGAGTGGCAAGTCTACAGCACTCTTAATGGTTGTTATGGACTTCCCTTGGTCCATTATAAAGGTCGCCAAGGAGACTACTATATCCTTGTCATGGACATGCTAGGACCGAGTTTATGGGATGTATGGAACTCTAACAGCCAGATGCTGTCTGAGGAGATGGTTTCCTGTATAGCTGTTGAGGCTATATCAATATTAGAGCAGCTTCATTTAAGAGGTTTTGTGCATGGAGACGTAAAGCCAGAAAACTTTTTGCTTGGTCTGCCTGGATCACCTAATGAAAAGAAGTTGTATTTAATTGATCTTGGTTTAGCTTCAAGATGGAGGGAAGCGTCCTCTGGTCATCATGTGGATTATGACCAAAAGCCCGATGTTTTCAGGGGAACTGTACGTTATGCAAGCGTACATGCTCATTTGGGAAGGACCGGCAGCCGAAGGGATGACCTTGAATCATTAGCTTATACGCTAATTTTCCTCCTCCGAGGAAAGCTTCCCTGGCAAGGTTTTATTGGGGAGAATAAAGGATTTCTTGTTTGTAAGAAGAAGATGGCAACTTCTCCTGAGATGCTTTGTTGCTTATGTCCTCCCCCTTTTCAACAGTTTCTTGAGATGGTGACCAACATGAGATTTGATGAAGAACCCAATTACATAAAGCTGATTTCCCTTTTTGATAACAGCATTGGTTCCATTGCATCTTTGCGGCCTATCAGAATAGATGGTGCTTTAAAGGTGGGTCAAAAAAGGGCAAGGCTTTCTGAGCAAGAAGATGGTGGTCAGCCTAAGAAGAAAGTTCGGCTAGGTTCTCCAGCTATGCAATGGATATCAGTTTATAACTCCAGAGCGTCGATGAAGCAGAGATATCACTACAATGTAATGGATTCAAGGCTTCATCAGCATGTGGAGAAAGGAAGGGAAGATGGACTGTATATTAGCTGTGTAGCTTCGTCAACAAATTTATGGGCCATCATTATGGATGCAGGAACGGGGTTCACATCCCAGGTTTATGAACTCTCAACCATTTTCTTACACAAGGAGTGGATAATGGAACAGTGGGATAAGAACTTCTATATCACTTCCGTTGCTGGTGCAAGCAATGGCAATGCTTTGGTGGTAATGTCAAAGGGGACCCCTTATAATCAACAATCATATAAAGTGAGCGATGTATTTCCTTTCAAATGGATAAATAAGAAGTGGAAAGAAGGCTTTTTTGTTACGTCCATGACCACTGCAGGCAGCAGATGGGGCATTGTCATGTCCCGAAATGCAGGTTTTTCTAATCAGGTTGTTGAGCTCGATTTCCTCTATCCAAGTGAAGGGATCCACAGAAGATGGGAGAGTGGATATCGAATTACCTCAACCGCTGCAACAGCAGATCAAGCTGCATTCATACTCAGTACATCCAAGAGGAGAACACAAGATGTGACGCAAGAAACTCTCCGGACATCTGCTTTTCCTTGCACCCATGTTAAGGATAAATGGTCAAAGAATCTGTATATTGCATCGATCTGCTATGGGAGAACTGTCTCTTAA 2103 0.447 MPDLRSGVRRSKRINDIQENAAALVPATRRGAGRGDDSKAQAIKSPSPKPYNPAFFYPRPRPAGRGRGARAMNQDKNGKLFGTGVGGRGRVGLDLAAREVVTIPDEVVAEKGAEKLAAVEEEGSASPLPEKVQISNSPMYKLDRKLGKGGFGQVYVGRRVTGGTGRTGPDAFEVALKLEHRNGKGCSYGPPYEWQVYSTLNGCYGLPLVHYKGRQGDYYILVMDMLGPSLWDVWNSNSQMLSEEMVSCIAVEAISILEQLHLRGFVHGDVKPENFLLGLPGSPNEKKLYLIDLGLASRWREASSGHHVDYDQKPDVFRGTVRYASVHAHLGRTGSRRDDLESLAYTLIFLLRGKLPWQGFIGENKGFLVCKKKMATSPEMLCCLCPPPFQQFLEMVTNMRFDEEPNYIKLISLFDNSIGSIASLRPIRIDGALKVGQKRARLSEQEDGGQPKKKVRLGSPAMQWISVYNSRASMKQRYHYNVMDSRLHQHVEKGREDGLYISCVASSTNLWAIIMDAGTGFTSQVYELSTIFLHKEWIMEQWDKNFYITSVAGASNGNALVVMSKGTPYNQQSYKVSDVFPFKWINKKWKEGFFVTSMTTAGSRWGIVMSRNAGFSNQVVELDFLYPSEGIHRRWESGYRITSTAATADQAAFILSTSKRRTQDVTQETLRTSAFPCTHVKDKWSKNLYIASICYGRTVS* 701
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g0390 700 SUPERFAMILY Protein kinase-like (PK-like) 140 420 IPR011009 -
Vvi11g0390 700 CDD STKc_CK1 139 414 - -
Vvi11g0390 700 ProSiteProfiles Protein kinase domain profile. 140 418 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi11g0390 700 Pfam Protein kinase domain 140 372 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi11g0390 700 MobiDBLite consensus disorder prediction 1 83 - -
Vvi11g0390 700 SMART serkin_6 140 393 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi11g0390 700 PANTHER CASEIN KINASE-RELATED 134 664 - -
Vvi11g0390 700 Gene3D Transferase(Phosphotransferase) domain 1 104 466 - -
Vvi11g0390 700 MobiDBLite consensus disorder prediction 1 16 - -
Vvi11g0390 700 ProSitePatterns Serine/Threonine protein kinases active-site signature. 265 277 IPR008271 GO:0004672|GO:0006468
Vvi11g0390 700 ProSitePatterns Protein kinases ATP-binding region signature. 146 177 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi11g0390 Vvi-Chr11 3306290 3322475 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi11g0390 257 429 MAP Kinase Kinase Kinase AT5G50180 26.966 4.37e-08 53.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1-Pl Vvi11g0390 Pkinase 8.6e-16 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g0390 - - vvi:100254414 1347.8