Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g0377 ATGGAAGCTCCCAATAACAACATCATAGCACCCTTCGTCATGAAGACGTATCAGATGGTCAACGATTCAAGCACTGATGCTCTCATCACCTGGGGCAGAGCCAACAACAGCTTCATCGTCTTCGACCCTTTAGACTTCTCCCAGAGGATCTTGCCCGCTTATTTCAAGCACAACAACTTCTCCAGCTTTGTTCGTCAGCTCAACACCTACGGTTTCAGAAAGGTTGATCCAGATAGATGGGAGTTCGCCAACGAGTGGTTCCTTCGTGGCCAGAGGCAATTGCTCAAGAACATCGTCAGGAAGAAGCATAGCTCTTGTGGTAGGAGTTCGTTTTTGCTACAGGCGAAGCTGGAAGATGGTGATGAGGAAATATTGGCGGAGATTGAGAGGCTGAAGCACGAGCAGAAGTCCCTTGAGGAGGAGCTTGAGGGGATGACCAAGAGGTTGGAAGCAACTGAGAGACGTCCACAGCAAATGATGGCGTTTCTCTACAAAGTTGTGGAAGACCCAGAGCTTATTCCGACAATGATGATGGAGAAAGAGAGGAGGAGGCAATTGGGCGAGAAGAAGAGGCGTCTTCTGATCCAATCGACATCGTCTTCCTCAGGCACCGCTGGGACGGCTTCAGTGAAGTCGGAAGAGGAAGAAGACGGCAGCACTGTAGGTATAATTTCATCGCCGGAGACTCTGAGCCACTCCTCGCCGTCGCCGGACACAAGCACTCCGGCGTGGGTGAGGCCAAGGCAGATGATGGGTTGGCCTCTCGTCGCCCAACAGCCTTACCCTTTGGCTGCCATTCCCAGTCCCATATATTCCGGGTCTGTGACCGGAATAGGACATTTCAACACGATGTCGCCGCCGCCTGAAAACACCATTTCTAGCTACAAGAGCAGTGATAGTGGGCAATTAAGCTATTTCACAGAAATGGAGGATGGGGTGGAGACCCGTCCGCTGCCTTATCCATTTTCTCTTTTAGAAGGTGGCTTTTAG 990 0.5121 MEAPNNNIIAPFVMKTYQMVNDSSTDALITWGRANNSFIVFDPLDFSQRILPAYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEWFLRGQRQLLKNIVRKKHSSCGRSSFLLQAKLEDGDEEILAEIERLKHEQKSLEEELEGMTKRLEATERRPQQMMAFLYKVVEDPELIPTMMMEKERRRQLGEKKRRLLIQSTSSSSGTAGTASVKSEEEEDGSTVGIISSPETLSHSSPSPDTSTPAWVRPRQMMGWPLVAQQPYPLAAIPSPIYSGSVTGIGHFNTMSPPPENTISSYKSSDSGQLSYFTEMEDGVETRPLPYPFSLLEGGF* 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g0377 329 ProSitePatterns HSF-type DNA-binding domain signature. 51 75 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vvi11g0377 329 PRINTS Heat shock factor (HSF) domain signature 50 62 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vvi11g0377 329 PRINTS Heat shock factor (HSF) domain signature 63 75 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vvi11g0377 329 PRINTS Heat shock factor (HSF) domain signature 12 35 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vvi11g0377 329 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 8 214 IPR027725 -
Vvi11g0377 329 MobiDBLite consensus disorder prediction 181 242 - -
Vvi11g0377 329 MobiDBLite consensus disorder prediction 222 242 - -
Vvi11g0377 329 Coils Coil 121 155 - -
Vvi11g0377 329 Gene3D - 5 102 IPR036388 -
Vvi11g0377 329 SMART hsfneu3 8 101 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vvi11g0377 329 FunFam Heat stress transcription factor B-4 4 102 - -
Vvi11g0377 329 MobiDBLite consensus disorder prediction 192 209 - -
Vvi11g0377 329 Pfam HSF-type DNA-binding 12 101 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vvi11g0377 329 SUPERFAMILY "Winged helix" DNA-binding domain 9 101 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi11g0377 Vvi-Chr11 3224092 3225166 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi11g0377 8 201 HSF AT3G24520 68.528 8.23e-91 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Vvi11g0377 HSF_DNA-bind 2e-30 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g0377 K09419 - vvi:100250904 642.114