Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g0369 ATGTCGTCACCGTCGCCGGGGCAGTCCCCTGGTCCGACTTCGCCCCCCTCTACAAACACTACCTCGCCTCCGCCCCCCTCTACAAACACCACCGCGCCTCCTCCGGCCACTCCTGCTGCGCCTCCGCCATCTTCGCCGTCGCCTCCACCGCCCACTGCACCGACGGGATCGCCGCCTACAGCCCCGGCTGGTTCTCCTCCGCCTCCTCCGGACTCTCCTGGCTCTCCACCACCTTCGGGCCAAACCGGTTCACCACCGCCACCTTCTAGGGCTTCTCCGCCACCACCACCATCTTCACCATCTTCGAACAAGAGCCCACCGCCACCTCCGTCCGACTCAAAATCACCTCCGCCGCCGCCTTCGTCTCCATCCTCAAACACTGTATCTACAGGTCTTGTAGTTGGAATCGCCATAGGTGGAGTTGTTATTCTCGTGGTGCTGAGTCTTCTCTTCATATGTTGCAAGAAGAAGAAGAGGAGAGATCACAGACAGGACTACTATGTGCCGCCGCCGCCGGGCCCGAAAAATGATCCGTATGGTGGTCCACCACAGCAGTGGCAACACAATGTCCCTCCACCTGCAGATCATGCTGTCACAGTGTTTCCAAAGCCCTCTCCTCCACCAGGAACTGCATCACGCCCGCCCCACTCACCGGTGCAGGTTCCTACACCTCCGCCACCTCCACAACCACCTTTTGTGAGCAGCAGTGGTGGTTCAGGGTCCAATTATTCAGGATCTGACAACCCTCTCCCCCCACCTTCCCCTAGCATTGCTTTAGGTTTCTCAAAGAGCACATTCACGTATGAAGAATTGGTGATGGCAACAGATGGCTTCTCAAATGCCAACCTTCTTGGACAAGGTGGTTTTGGGTATGTGCACAGAGGTGTCCTTCCCAATGGGAAAGAAGTTGCAGTTAAGCAGCTCAAAGCTGGAAGTGGGCAGGGGGAGCGTGAATTTCAGGCAGAGGTTGAGATCATTAGTCGAGTACATCACAAACATCTTGTAACCTTAGCTGGATATTGCATCACTGGATCACATAGACTGCTTGTTTATGAGTTTGTTCCGAACAACACCTTGGAGTTTCATTTACATGGAAAAGGACGACCTACTATGGATTGGTCCACAAGACTGAAAATTGCTTTAGGATCTGCAAAAGGACTCGCATACTTGCACGAGGATTGTCACCCTAAGATCATTCATCGCGATATCAAGGCAGCTAATATACTTTTGGATTTCAAGTTTGAGGCAAAGGTTGCAGATTTTGGACTTGCTAAGTTTTCTTCTGATGCCAATACTCATGTCTCGACTCGGGTAATGGGAACTTTTGGGTACTTGGCTCCAGAATATGCTGCAAGTGGGAAACTTTCAGACAAGTCAGATGTTTTCTCCTTTGGAGTCATGCTTCTTGAGTTGCTTACTGGTCGCAGACCTGTTGATGCAAACCAAACCTTCATGGAAGATAGTTTGGTGGACTGGGCGAGACCTTTGCTCACAAGAGCTCTTGAAGATGGAAACTTTGATACTCTTGTTGATCCGCGCTTGCAAAAGGATTACAACCACCACGAAATGGCTCGCATGGTTGCTTGTGCTGCTGCTTGTGTGCGTCATTCAGCCCGGCGTCGACCAAGAATGAGCCAGATTGTCCGGGCATTGGAAGGAGATGCATCTCTATCTGATCTTAATGAAGGAATGAGACCTGGGCAAAGCTCAATCTACAGTTCCCATGGAAGTTCAGACTATGACACCAACCAGTACAATGAGGACATGATAAAATTCAGAAAGATGGCGTTGGCAAGCAGGGACTATGGCAGCAGTGAGTACAGTGGACCTACAAGTGAATATGGTTTGTATCCATCTGGCTCAAGTAGCGAAGGCCAACGAACCACCCGAGAGATGGAGATGGGAAAGATGAAGAAAGACAGTCGAGGCTACAGTGGAGGCTCTGAAAAATAA 1953 0.512 MSSPSPGQSPGPTSPPSTNTTSPPPPSTNTTAPPPATPAAPPPSSPSPPPPTAPTGSPPTAPAGSPPPPPDSPGSPPPSGQTGSPPPPSRASPPPPPSSPSSNKSPPPPPSDSKSPPPPPSSPSSNTVSTGLVVGIAIGGVVILVVLSLLFICCKKKKRRDHRQDYYVPPPPGPKNDPYGGPPQQWQHNVPPPADHAVTVFPKPSPPPGTASRPPHSPVQVPTPPPPPQPPFVSSSGGSGSNYSGSDNPLPPPSPSIALGFSKSTFTYEELVMATDGFSNANLLGQGGFGYVHRGVLPNGKEVAVKQLKAGSGQGEREFQAEVEIISRVHHKHLVTLAGYCITGSHRLLVYEFVPNNTLEFHLHGKGRPTMDWSTRLKIALGSAKGLAYLHEDCHPKIIHRDIKAANILLDFKFEAKVADFGLAKFSSDANTHVSTRVMGTFGYLAPEYAASGKLSDKSDVFSFGVMLLELLTGRRPVDANQTFMEDSLVDWARPLLTRALEDGNFDTLVDPRLQKDYNHHEMARMVACAAACVRHSARRRPRMSQIVRALEGDASLSDLNEGMRPGQSSIYSSHGSSDYDTNQYNEDMIKFRKMALASRDYGSSEYSGPTSEYGLYPSGSSSEGQRTTREMEMGKMKKDSRGYSGGSEK* 651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g0369 650 FunFam Proline-rich receptor-like protein kinase PERK1 354 562 - -
Vvi11g0369 650 SMART serkin_6 278 514 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi11g0369 650 MobiDBLite consensus disorder prediction 167 189 - -
Vvi11g0369 650 MobiDBLite consensus disorder prediction 1 128 - -
Vvi11g0369 650 MobiDBLite consensus disorder prediction 197 233 - -
Vvi11g0369 650 MobiDBLite consensus disorder prediction 629 650 - -
Vvi11g0369 650 SUPERFAMILY Protein kinase-like (PK-like) 251 551 IPR011009 -
Vvi11g0369 650 Gene3D Transferase(Phosphotransferase) domain 1 354 563 - -
Vvi11g0369 650 MobiDBLite consensus disorder prediction 604 628 - -
Vvi11g0369 650 ProSiteProfiles Protein kinase domain profile. 278 557 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi11g0369 650 Pfam Protein tyrosine and serine/threonine kinase 282 551 IPR001245 GO:0004672|GO:0006468
Vvi11g0369 650 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 140 606 IPR047117 -
Vvi11g0369 650 MobiDBLite consensus disorder prediction 602 650 - -
Vvi11g0369 650 MobiDBLite consensus disorder prediction 558 580 - -
Vvi11g0369 650 MobiDBLite consensus disorder prediction 1 124 - -
Vvi11g0369 650 FunFam proline-rich receptor-like protein kinase PERK1 256 353 - -
Vvi11g0369 650 Gene3D Phosphorylase Kinase; domain 1 256 353 - -
Vvi11g0369 650 MobiDBLite consensus disorder prediction 158 256 - -
Vvi11g0369 650 ProSitePatterns Protein kinases ATP-binding region signature. 284 306 IPR017441 GO:0005524
Vvi11g0369 650 MobiDBLite consensus disorder prediction 562 580 - -
Vvi11g0369 650 CDD STKc_IRAK 284 553 - -
Vvi11g0369 650 ProSitePatterns Serine/Threonine protein kinases active-site signature. 398 410 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi11g0369 Vvi-Chr11 3164080 3169455 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi11g0369 87 631 Trihelix Transcription Factor Family AT1G70460 50.991 1.16e-172 507
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Vvi11g0369 PK_Tyr_Ser-Thr 1.3e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g0369 - - vvi:100247489 942.569