Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g0363 ATGAATCGTGGCTTTACTTCAACTTCACAAGAGATGACGTCTCTGCAATTCTTCCCTCCGTCGTCATCATTATCTTCCCGGAGAGACCCCAATTTAGTCCTTGTCCAACGCTTGAAACGTATTGAAAACCCCAGTTTTATTGTCTTCAATCTCTACCCCATTTCTAGAACCCCTCATTTCAGTAAAAAATTAATCCTTCCCTTCGAAAACCCTAATTTTCAAGGGTTTAAGCCCATAAACTCCAGAACCCGCTTGCAGAGACTAAATTGCAATGGGTTCAAAGACTCCAGTGAAGAAACCAAAGCAGTTCTGGACGAGGAAGGCGGCGACGGCGGCGGAGATGGAGGAGATGATGCCCAGACGGAGAAGAAGGATGCAAAGGTCGGGATTTTACCGGAATGGGTGAATTTGACGTCTGACGATGCAAAAACGGTTTTTGCGGCACTGGCGATATCGTTTGCGTTTCGGTCGTTTGTGGCTGAACCTAGATTCATTCCTTCATTGTCAATGTACCCTACATTTGATGTTGGAGATAGAATTGTTGCAGAAAAGGTTTCATACTATTTCAGAAAGCCTTGTGCTAATGATATAGTGATTTTTAAAAGCCCACCAGTCCTTCAAGAAGTAGGATATACTGATGAAGATGTATTCATTAAAAGAATTGTTGCTAAGGAAGGTGATACTGTGGAGGTTCGTGAAGGGAAGTTAATTGTAAACGGAGTTGTGAGAAATGAAAATTTCATCTTTGAACGACCTTCTTACAGCATGACACCAATTCGTGTACCAGAGAATGCGGTTTTTGTGATGGGTGACAATCGTAATAATAGCTATGATTCACATGTCTGGGGCTCTCTGCCTGCCAAAAATATATTAGGAAGATCAATCTTTCGGTATTGGCCTCCAAACCGAATTGGTGGCACAGTTTCTGATGCTGGTTGTGCTGTTGACAAGCAAGAGAGTAGTCCAGCATTAAGTGATTCAGCATCATCGAGCAATCCAGCATTGAGCGTTCCCATATCAAGCAGTCCAACACCTTGA 1038 0.4297 MNRGFTSTSQEMTSLQFFPPSSSLSSRRDPNLVLVQRLKRIENPSFIVFNLYPISRTPHFSKKLILPFENPNFQGFKPINSRTRLQRLNCNGFKDSSEETKAVLDEEGGDGGGDGGDDAQTEKKDAKVGILPEWVNLTSDDAKTVFAALAISFAFRSFVAEPRFIPSLSMYPTFDVGDRIVAEKVSYYFRKPCANDIVIFKSPPVLQEVGYTDEDVFIKRIVAKEGDTVEVREGKLIVNGVVRNENFIFERPSYSMTPIRVPENAVFVMGDNRNNSYDSHVWGSLPAKNILGRSIFRYWPPNRIGGTVSDAGCAVDKQESSPALSDSASSSNPALSVPISSSPTP* 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g0363 345 FunFam Peptidase/ serine-type peptidase 167 298 - -
Vvi11g0363 345 ProSitePatterns Signal peptidases I signature 3. 266 279 IPR019758 GO:0004252|GO:0016020
Vvi11g0363 345 MobiDBLite consensus disorder prediction 1 27 - -
Vvi11g0363 345 Gene3D Umud Fragment, subunit A 155 310 - -
Vvi11g0363 345 SUPERFAMILY LexA/Signal peptidase 156 307 IPR036286 -
Vvi11g0363 345 Pfam Signal peptidase, peptidase S26 142 299 IPR019533 GO:0004252|GO:0006465
Vvi11g0363 345 MobiDBLite consensus disorder prediction 315 345 - -
Vvi11g0363 345 PRINTS Bacterial leader peptidase 1 (S26A) family signature 158 174 IPR000223 GO:0006508|GO:0008236|GO:0016020
Vvi11g0363 345 PRINTS Bacterial leader peptidase 1 (S26A) family signature 217 229 IPR000223 GO:0006508|GO:0008236|GO:0016020
Vvi11g0363 345 PRINTS Bacterial leader peptidase 1 (S26A) family signature 261 280 IPR000223 GO:0006508|GO:0008236|GO:0016020
Vvi11g0363 345 ProSitePatterns Signal peptidases I serine active site. 167 174 IPR019756 GO:0004252|GO:0016020
Vvi11g0363 345 NCBIfam signal peptidase I 143 301 IPR000223 GO:0006508|GO:0008236|GO:0016020
Vvi11g0363 345 MobiDBLite consensus disorder prediction 320 345 - -
Vvi11g0363 345 PANTHER SIGNAL PEPTIDASE I 129 305 IPR000223 GO:0006508|GO:0008236|GO:0016020
Vvi11g0363 345 CDD S26_SPase_I 161 293 IPR019533 GO:0004252|GO:0006465
Vvi11g0363 345 MobiDBLite consensus disorder prediction 104 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi11g0363 Vvi-Chr11 3124660 3129033 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi11g0363 170 300 MADS-box Gene Family AT1G29960 32.576 2.32e-12 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g0363 K03100 - vvi:100252527 648.277