Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g0356 ATGGCAAGTATGATGACAGCAGGGGTCAAGAGAGCTGAAGTCTTAGTCTCTACTTCTGAGGCGAATGGTGATAGTTTTCAAAAGATGAGGGCTTTGCATGGGAGGACTACTGGCCCTACAAGGCGATCAACAAAGGGACAGTGGACAGCTGAAGAGGATGAGTTACTATGCAAGGCAGTCCAACGATTCAAAGGAAAAAATTGGAAAAAAATAGCTGAATGTTTCAAGGATCGGACCGATGTTCAGTGTTTGCACAGGTGGCAGAAAGTCTTAAATCCTGAACTCATCAAAGGTCCATGGTCTAAAGAGGAGGATGAGATAATAATTGAGTTAGTGAATAAGTATGGGCCAAAGAAGTGGTCAACTATTGCACAAGCATTACCTGGACGAATTGGAAAGCAATGTCGGGAAAGGTGGCACAATCATCTAAATCCTGCCATAAACAAGGAAGCATGGACTCAAGAAGAGGAACTGGCTTTAATTCATGCTCATCAAATTTATGGGAACAAGTGGGCCGAGTTAACAAAATTCTTGCCTGGAAGGACAGACAATGCAATAAAAAATCACTGGAACAGCTCAGTAAAAAAGAAGTTGGAATCTTATTTGGCATCAGGTTTACTTGCACAGTTCCAAAGTTTGTCTTATGTGGGAAACCCAAACCCTTCATCCTCTTTCAAGATGCAAAACAATGGAGATGATACTGGCCAATTATATGTGGCAATAGCAGAAGAAACTTCAGAATGTAGTCAGGGATCAAATGTAATCAATTGCTCTCAATCTGAGCCTGATACAGAAAATATGGCTATAAATGCAACAGAGAATTTTAAGATGACTGAGGATTCCAGTGAAAGAAAGGACCACAATAATTTTGGTACATCATGTTCCACGTCTCTGGAAGAATCTGCTGTCCTAGAAATACATCACATGGATGCTTTTTTTGACCAACAACTGTTGTGTGAGATTGGAACTTCTGAAAGTAAGGATTGCCAATTTAGTTCCCATGAATTACCTGGTGCCTCTTTGTTAGATGTGTCACGGGAGTCACCAGGACTTTCTGGAACACCACAATATTGCATCAGTTTGAATGGAAGCCATGACACAGGACCTACTCTGTTACAAAGCTCTGTTGGGTTCAAATCTTCCACTTCAACAGAAAATATCCTTATTGATTCTGATAAACTGGAGCACCTATTGATATCTGAGAATGATTACTCTGAGATTACGCTCTCAGAAGCAGTGATCCATGGAAACTTTCGTTGTGTAAATGCAGAAAATTTGTCCAATAATATTGACTCGGATGGGGGGACAAGTTCATTACATTGCCAGTCTGATTTGCAGAGCTCTGCAACCACTGGATCTTTAGCTTTGGAGTCATATATCACTCAGGGCAGTGTCTTAGGACAAACTCTGGAATTGGAGATCTTTACAAGTTCTTGCAATGACTTCATTGACATTGATTCTCCTGACGGTGAAACAGATAAAGCAGGTGACCATCTGAAACTAGATAAGGCAAAGAATGCTCCAAAACTGGTTCCTGTAGATATATTTAGTTTAGCAAATGCAGAATCTATGGGAACCCTTCCCTCCATGGATGACAACAAAAGCCAGCATCTAAAGTCAGATGGGAAAAAGGATGCTTCAGGGCTGGCTCCTGTGGATCTGTTAAGCTCAGAAAATTCAGATTCTACACAAGCCCAGCCCTCTATGGATAACAACACCACAGTACTCGTAGAAGAAAAGAATTCAAGAGCTCTATTTTATGAGCCCCCTCGTTTTCCAAGATTAGATATTCCCTTTGTAAGCTGTGATCTCATGGCATCTGGTAGTGATATGCAGCAAGAATATAGTCCATTTGGGATTCGTCAACTATTGATACCCTCAATGAACTTCTCCACACCATGCAGTTTACAGGATTCACCATGTAGGGGCGGTACTCCAGATTCCATATTAAAGAATGCTGCTAAAAGCTTCACATCAACACCTTCCATATTGAAAAAACGACCACGTGAAGTTGTGTCACCTTCTGAACAAGCAAGAGGAGAGAAAAACCCTGAGAGGGAGACAAATCTGCTGGGCCTATTCTGTGCCAACGATTTTCCTTCTCTAGATGTTATTTTTTATGAGAATGGGCCTTGCAATCCATCCTTATCTTCTACAGAGAGGAATTCCCTTTCTCCTCATTACAAGAAAGTAAATTTAGATCATGTTTTTGAAGAGGGGAAAGAGGGCATTGCAAATTCAGAGAGCAGAGTTTCAGAGAAAGGCAAGGTTAAGCAGGGGACCAATGTCTTTGGTGCTAAGGCCAAGTGTGAGGTGGATACTACTTCCCAAACCCATTCAGGAGTTCTTGTTGAATGTAACAAGAATGATCAGCTAATTTCCTCTCATGATAGAGATGAATATCAAACAAGTGGAGCCATGGGTGCTGGAGCTTTAAGCTCTGGAACAAAGGATTCTAGAAAGTTGGACACTGCATCCAATCAGAGTGGCCTTTTAGAATCTTCATCTGGGAAGCAGCCTCTTTCTAGCTTTCTCCCTTCTGCAGTCTGTGCAAAGAAAAATGAGAGGCATGTAGTTCCAGTCACATCTTCACGATGCACTCAATCATCAAACTTGCTAGAAATTACATTTGAAAATGCAGGGAGTGATGGTGATATTCAAAGTTTTAACATATTTGGTGACACCCCAGGTATTAAAAGAGGAATTGAATCTCCATCAGCATGGAAGTCTCCTTGGTTTATGAACTCTTTTCTCCCTGGACCAAGAATTGATACAGATGTGACAACTGAGGACCTGGAATATTTCATGAGTCCTGGGATGAGAAGTTATGATGCCATAGGATTGATGAGACAGATGAATGAACACACTGCAGCTGCATTCACCAATGCACGAGAAATTTTGGCCAGTGATGATCCTGAAATGCCCTCTAAAACAAAACTCTCTAGTAACCAAAGTTCATCGCCAGAGACCAATGATTTTCCTCATAATGAGCAGGAGAATAAGGTTCCTGGTGTCTTGACGGAGAGGCGAGTTCTTGATTTCAGTGGATGTGGAACACCTGGGAAGGGAACAGAGAAGAAGAAATTCTCAGGTTTTGGGGCTACAGTAAGCTTTTCAAGTCCCTCATCCTATCTATTGAAAAGTTGCAGGTAG 3153 0.4152 MASMMTAGVKRAEVLVSTSEANGDSFQKMRALHGRTTGPTRRSTKGQWTAEEDELLCKAVQRFKGKNWKKIAECFKDRTDVQCLHRWQKVLNPELIKGPWSKEEDEIIIELVNKYGPKKWSTIAQALPGRIGKQCRERWHNHLNPAINKEAWTQEEELALIHAHQIYGNKWAELTKFLPGRTDNAIKNHWNSSVKKKLESYLASGLLAQFQSLSYVGNPNPSSSFKMQNNGDDTGQLYVAIAEETSECSQGSNVINCSQSEPDTENMAINATENFKMTEDSSERKDHNNFGTSCSTSLEESAVLEIHHMDAFFDQQLLCEIGTSESKDCQFSSHELPGASLLDVSRESPGLSGTPQYCISLNGSHDTGPTLLQSSVGFKSSTSTENILIDSDKLEHLLISENDYSEITLSEAVIHGNFRCVNAENLSNNIDSDGGTSSLHCQSDLQSSATTGSLALESYITQGSVLGQTLELEIFTSSCNDFIDIDSPDGETDKAGDHLKLDKAKNAPKLVPVDIFSLANAESMGTLPSMDDNKSQHLKSDGKKDASGLAPVDLLSSENSDSTQAQPSMDNNTTVLVEEKNSRALFYEPPRFPRLDIPFVSCDLMASGSDMQQEYSPFGIRQLLIPSMNFSTPCSLQDSPCRGGTPDSILKNAAKSFTSTPSILKKRPREVVSPSEQARGEKNPERETNLLGLFCANDFPSLDVIFYENGPCNPSLSSTERNSLSPHYKKVNLDHVFEEGKEGIANSESRVSEKGKVKQGTNVFGAKAKCEVDTTSQTHSGVLVECNKNDQLISSHDRDEYQTSGAMGAGALSSGTKDSRKLDTASNQSGLLESSSGKQPLSSFLPSAVCAKKNERHVVPVTSSRCTQSSNLLEITFENAGSDGDIQSFNIFGDTPGIKRGIESPSAWKSPWFMNSFLPGPRIDTDVTTEDLEYFMSPGMRSYDAIGLMRQMNEHTAAAFTNAREILASDDPEMPSKTKLSSNQSSSPETNDFPHNEQENKVPGVLTERRVLDFSGCGTPGKGTEKKKFSGFGATVSFSSPSSYLLKSCR* 1051
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g0356 1050 CDD SANT 99 143 IPR001005 -
Vvi11g0356 1050 MobiDBLite consensus disorder prediction 796 841 - -
Vvi11g0356 1050 SUPERFAMILY Homeodomain-like 94 190 IPR009057 -
Vvi11g0356 1050 MobiDBLite consensus disorder prediction 526 573 - -
Vvi11g0356 1050 MobiDBLite consensus disorder prediction 663 684 - -
Vvi11g0356 1050 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 92 147 IPR017930 -
Vvi11g0356 1050 FunFam Transcriptional activator Myb isoform A 44 96 - -
Vvi11g0356 1050 MobiDBLite consensus disorder prediction 975 993 - -
Vvi11g0356 1050 Gene3D - 150 206 - -
Vvi11g0356 1050 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 148 198 IPR017930 -
Vvi11g0356 1050 PANTHER MYB PROTEIN-RELATED 44 91 - -
Vvi11g0356 1050 MobiDBLite consensus disorder prediction 817 841 - -
Vvi11g0356 1050 Gene3D - 44 96 - -
Vvi11g0356 1050 ProSiteProfiles Myb-like domain profile. 144 194 IPR001005 -
Vvi11g0356 1050 Pfam Myb-like DNA-binding domain 97 143 IPR001005 -
Vvi11g0356 1050 Pfam Myb-like DNA-binding domain 45 91 IPR001005 -
Vvi11g0356 1050 Pfam Myb-like DNA-binding domain 149 191 IPR001005 -
Vvi11g0356 1050 ProSiteProfiles Myb-like domain profile. 40 91 IPR001005 -
Vvi11g0356 1050 MobiDBLite consensus disorder prediction 553 573 - -
Vvi11g0356 1050 CDD SANT 48 91 IPR001005 -
Vvi11g0356 1050 FunFam Transcriptional activator Myb isoform A 97 149 - -
Vvi11g0356 1050 Gene3D - 97 148 - -
Vvi11g0356 1050 MobiDBLite consensus disorder prediction 669 684 - -
Vvi11g0356 1050 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 40 91 IPR017930 -
Vvi11g0356 1050 CDD SANT 151 191 IPR001005 -
Vvi11g0356 1050 ProSiteProfiles Myb-like domain profile. 92 143 IPR001005 -
Vvi11g0356 1050 MobiDBLite consensus disorder prediction 968 1007 - -
Vvi11g0356 1050 FunFam Transcription factor MYB3R-2 150 212 - -
Vvi11g0356 1050 SUPERFAMILY Homeodomain-like 43 105 IPR009057 -
Vvi11g0356 1050 SMART sant 148 196 IPR001005 -
Vvi11g0356 1050 SMART sant 44 93 IPR001005 -
Vvi11g0356 1050 SMART sant 96 145 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi11g0356 Vvi-Chr11 3061527 3072065 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi11g0356 29 1050 MYB Transcription Factor Family AT4G32730 39.139 0.0 590
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vvi11g0356 Myb_DNA-bind_6 6.8e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g0356 - K09420 vvi:100255911 2078.91