Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g0349 ATGGAGCAAGGTGAGGGAGGGGATTTCCCTCCAAAAAAGGTTCAATCGGATACGGCTGGGACGGCGGCTGTGACGTCGGATATTCCGCTGAAGAAGCTCGCAAGGCAGCTGGATTTTACGGCTTTTGGTGGTGCATCGGCGGCGGTGGTCTTGCCGGAGCACCCTCAGTCGCAGCCTCAGGCGCAGGCGCAGCATCCAGTGACGATGCCGGTGCCACCCCAGACGACTCATCCTTCAGTGAGGGTTGTGAAACCAGAATCCCCAAGATCGCGACCAAGACCCAATATTGATGTGAAAGATGGTACTCCAAAGAAGCAAAAACAATGCAACTGCAAACACTCTCGATGCTTGAAATTGTATTGTGAGTGTTTTGCATCTGGAATATATTGTGATGGGTGTAACTGTGTAAATTGTCACAATAATGTTGAAAATGAGGCTGCTAGGCGAGAAGCTGTTGAAGTTACCTTGGAGCGTAATCCAAATGCTTTCAGGCCAAAAATTGCTAGCAGTCCACATGGAGCTCGGGATAGCAGGGAGGAGTCTGGGGAAGCTTTAGTGTTGGGAAAGCACAACAAGGGATGCCATTGCAAGAAATCAGGGTGTTTAAAAAAATACTGTGAGTGCTTCCAAGCCAACATTCTCTGCTCTGAAAATTGTAAATGCATGGACTGCAAGAACTTTGAAGGAAGTGAAGAGAGACAGGCTCTCTTCCATGGAGACCATGCCAACAGCATGGCATATATCCAGCAGGCTGCTAATGCTGCCATCACTGGAGCTATTGGATCCTCTGGCTTTGGATCTCCTCCAGTATCCAAGAAGAGAAAAGGTCAGGAACTGTTTTATGGGCCGACATCCAAGGATCCGTCTCTTCACAGGCTTGCACAATTCCAACAGGCAAGCCTTACCAAAGCATCTGTAACCACCTCTTCATTGTCTTCCACCCCTGTTTCTCGTGTCCCTAACAGTGCAGCATCAGGCACCTCAAAATTTACTTACAGGTCTCTCTTAGCAGACATCATTCAACCGCAGGACTTGAAGGAGCTTTGCTCTGTTCTGGTGGTAGTGTCTGAAGAAGCTGCCAGGACATTTGCAGACAAAAGAAATCTGGTGGAAAAGCCTGCAGAAGAACAGGTAGAAACTTCTCGTGCTTCATCGACTCAAGACAGGTTACAAAGCCAGAAGGAATCTGACATTGAGAAAGCAGTGGCTGATGATTGCTCAAGTAGAAACCAGGCTGATAAACTTGGGCCTGATGATTCCAGCTCAGATGGTGGGGATGTGCCAAAAGGGAGGCCAATGTCTCCTGGAACCCTAGCATTGATGTGTGATGAACAAGATACAATGTTCATGGCAGCTGCCTCCCCTAATGTGTTAATGGGCCATAGCTGCAACACATCTTCACAATTGCCTTATGGGCAAGGTATAACAGAGGCCTATGCGGAGCAGGAAAGGATTATCTTGACTAAGTTTCGAGATTGTCTCAACAGGCTCATAACTTTTGGAGAAATTAAAGAAACAAAGTGCTCCTCGCTAGCCAGAACTGAATCAGGAGGTCAAAATGAGCCATTCAGCAATGGCCCTGCAAATGCCAGAACCGATACTGGCAATCAACAGGTGCCTGTTAGCAATGGTGTTTCAAAACCTCCCTTTCCTCCAGCAACCAAGATGTCTCAGACGGTCACTGCAGCCGCCGCTTCTCCCAATAATACCCTGCTTTCAAAACCTTCAACCCACACTGAAAATGGGGATATAAATCTAAAGACCGAAAAAGAGTTGTAA 1779 0.4761 MEQGEGGDFPPKKVQSDTAGTAAVTSDIPLKKLARQLDFTAFGGASAAVVLPEHPQSQPQAQAQHPVTMPVPPQTTHPSVRVVKPESPRSRPRPNIDVKDGTPKKQKQCNCKHSRCLKLYCECFASGIYCDGCNCVNCHNNVENEAARREAVEVTLERNPNAFRPKIASSPHGARDSREESGEALVLGKHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFEGSEERQALFHGDHANSMAYIQQAANAAITGAIGSSGFGSPPVSKKRKGQELFYGPTSKDPSLHRLAQFQQASLTKASVTTSSLSSTPVSRVPNSAASGTSKFTYRSLLADIIQPQDLKELCSVLVVVSEEAARTFADKRNLVEKPAEEQVETSRASSTQDRLQSQKESDIEKAVADDCSSRNQADKLGPDDSSSDGGDVPKGRPMSPGTLALMCDEQDTMFMAAASPNVLMGHSCNTSSQLPYGQGITEAYAEQERIILTKFRDCLNRLITFGEIKETKCSSLARTESGGQNEPFSNGPANARTDTGNQQVPVSNGVSKPPFPPATKMSQTVTAAAASPNNTLLSKPSTHTENGDINLKTEKEL* 593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g0349 592 MobiDBLite consensus disorder prediction 84 107 - -
Vvi11g0349 592 MobiDBLite consensus disorder prediction 372 438 - -
Vvi11g0349 592 MobiDBLite consensus disorder prediction 1 27 - -
Vvi11g0349 592 MobiDBLite consensus disorder prediction 512 592 - -
Vvi11g0349 592 PANTHER TESMIN/TSO1-RELATED 54 504 IPR028307 -
Vvi11g0349 592 MobiDBLite consensus disorder prediction 265 286 - -
Vvi11g0349 592 MobiDBLite consensus disorder prediction 54 70 - -
Vvi11g0349 592 ProSiteProfiles CRC domain profile. 105 229 IPR005172 -
Vvi11g0349 592 MobiDBLite consensus disorder prediction 54 107 - -
Vvi11g0349 592 SMART CXC_2 104 144 IPR033467 -
Vvi11g0349 592 SMART CXC_2 189 230 IPR033467 -
Vvi11g0349 592 MobiDBLite consensus disorder prediction 552 582 - -
Vvi11g0349 592 MobiDBLite consensus disorder prediction 512 544 - -
Vvi11g0349 592 MobiDBLite consensus disorder prediction 392 407 - -
Vvi11g0349 592 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 106 141 IPR005172 -
Vvi11g0349 592 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 192 226 IPR005172 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi11g0349 Vvi-Chr11 3008299 3017514 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi11g0349 2 547 CPP Transcription Factor Family AT4G29000 57.436 0.0 603
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Vvi11g0349 TCR 3.1e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g0349 - - vvi:100249023 1118.22