Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g0346 ATGGATCTGCCCAGTCGGAGCTGGAGCATCCATACCCGACCCGAAATCATCCAGAAGTACGAAATTCTTGAGCGTGTCGGCGCCGGCGCCTACTCCGACGTGTACAAAGGCCGGCGTCTCTCCGACGATCTAATCGTCGCTCTCAAGGAGATCCACGACTACCAGTCGGCGTTCCGCGAAATCGAGGCGCTTCAGGTGCTTCAGAGCTCCCCGAATGTTGTCGTTTTGCACGAGTACTTCTGGAGCGAGGACGAGGACGCTGTTCTCGTTCTCGAGTTTTTGAGGACCGACTTGGCCTCCTTGATCAAAGACGCCAAAAGGAATTGGGAGGACGGGATCAGCGGCGGCGAGATCAAGCGATGGATGGTTCAGATTTTGCATGCGGTAGACGCGTGTCACCGGAATTCGATTGTGCATCGCGATTTGAAGCCCTCCAATTTGTTGATTTCCGAGACTGGCGTTCTTAAATTGGCGGATTTTGGGCAGGCAAGGATACTTATAGAACCTGGATTTGATAACCCACACCTGCATGAGCCACATGATCCAAATCAAGTAACTATTATTCAACATGCTGAAGTTATTCCAGAAGCAGACAATTCACACCAGGAAGGTTCTGGCAATCAAGAGAGAGGGACTATGAGTAAGGAAGAATATGCTAGTGACTTAGAGGACCTCAAGGCTAAAAGTTCCATAGATGATATTGATAAGGAAACTAATTTTCATGATGGAAATGCATCATGTCTTGCTACCTGCACAACAAGTGACATAGAGGAGGATGATCCTTTCAAGGGTTCATATTATTATGAGGCAGAGGAGGGTGGAGATGATACAAGTGGGAAGCTCACATCTTGTGTTGGAACTCGATGGTTCAAGGCCCCTGAACTACTCTATGGATCCACCAACTATGGGCCTGAGATAGATCTGTGGTCATTGGGCTGCATTTTTGCAGAGCTATTCAGTTTGGAGCCCCTGTTTCCTGGAAGTTCTGATATTGATCAGCTCAGCAGAATTTTCAGTGTGTTGGGCAATTTAACTGAGGAAAATAGCCCAGGTTGTTCAAAATATCCTGATTATGGAATAATTTCATTTAATAAAGTAGAAAATCCAGTTGGTTTGGAAGCCTGCCTGCCCAACCACTCCCCTGATGAACTCCTTTTAGTGAAAAAACTTATTTGTTTCGACCCAGCTAGTAGAGCTACTGCAATGGAATTGCTTCATGATAAGTATCTGAATGAAGAACCTCTACCAGTTCCAGTCTCTGAGCTTCGGGTTCCTTCCACCAACCATGCTCAAGATGAAGGTTCTCCTGGTGAGTGTTGTGACTACAAAGACATGGATTCAGATTCGGATTTTGAGGAGTTTAGCACTTTCAATGTCACTACCACTAATGCTGGTTTTTCGATTCAGTTTCCTTGA 1416 0.4626 MDLPSRSWSIHTRPEIIQKYEILERVGAGAYSDVYKGRRLSDDLIVALKEIHDYQSAFREIEALQVLQSSPNVVVLHEYFWSEDEDAVLVLEFLRTDLASLIKDAKRNWEDGISGGEIKRWMVQILHAVDACHRNSIVHRDLKPSNLLISETGVLKLADFGQARILIEPGFDNPHLHEPHDPNQVTIIQHAEVIPEADNSHQEGSGNQERGTMSKEEYASDLEDLKAKSSIDDIDKETNFHDGNASCLATCTTSDIEEDDPFKGSYYYEAEEGGDDTSGKLTSCVGTRWFKAPELLYGSTNYGPEIDLWSLGCIFAELFSLEPLFPGSSDIDQLSRIFSVLGNLTEENSPGCSKYPDYGIISFNKVENPVGLEACLPNHSPDELLLVKKLICFDPASRATAMELLHDKYLNEEPLPVPVSELRVPSTNHAQDEGSPGECCDYKDMDSDSDFEEFSTFNVTTTNAGFSIQFP* 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g0346 471 Gene3D Phosphorylase Kinase; domain 1 11 106 - -
Vvi11g0346 471 Gene3D Transferase(Phosphotransferase) domain 1 275 414 - -
Vvi11g0346 471 Pfam Protein kinase domain 278 410 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi11g0346 471 Pfam Protein kinase domain 20 168 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi11g0346 471 ProSitePatterns Protein kinases ATP-binding region signature. 26 49 IPR017441 GO:0005524
Vvi11g0346 471 SMART serkin_6 20 410 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi11g0346 471 PANTHER CELL DIVISION PROTEIN KINASE 18 416 - -
Vvi11g0346 471 ProSiteProfiles Protein kinase domain profile. 20 410 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi11g0346 471 Gene3D Transferase(Phosphotransferase) domain 1 107 220 - -
Vvi11g0346 471 FunFam Cyclin-dependent kinase F-1 11 105 - -
Vvi11g0346 471 ProSitePatterns Serine/Threonine protein kinases active-site signature. 137 149 IPR008271 GO:0004672|GO:0006468
Vvi11g0346 471 SUPERFAMILY Protein kinase-like (PK-like) 8 424 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi11g0346 Vvi-Chr11 2976803 2979663 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi11g0346 4 471 Core Cell Cycle Gene Families AT4G28980 64.570 0.0 615
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CCRK Vvi11g0346 Pkinase 6.7e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g0346 - - vvi:100261054 958.362