Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g0341 ATGGCATTGTTTGAGCCTAGACGGAGCCAAATCCAAAAACAGAAACAGCCCATATATGCAGAATCCAGCAGTTCTCCAGAACGTGTCATGGCAGCAGATTCTGATGATCCGCCTGGTGGTGGAAAGTGTACGCCTCCGAAGGACTTTATCTGTCCCATAACCAGCCACATATTCGATGATCCGGTGACTCTTGAGACAGGTCAGACATATGAGAGGAAAGCAATTCAAGAATGGATAGATAGGGGAAACTCCACATGCCCAATCACACGCCAGAAGCTGCATAGTACCCAACTTCCCAAAACAAACTATGTACTCAAACGGCTCATTGCAAGTTGGCAAGAACAAAATCCTGGTTTTATCTCAATTCACTCTGATAATCCAGACCCAGAGACTGACCCAATCTTCAACTCTACACTGCCTGTGCTACCTTCAACTTCTCCGAACAGTGTTATAATAAGCCAAGCCACCATGGATGGGACGATTTGTGAGCTGCGACTTGCTATTACCAAGCTTTGTATGTCTGAAATTCTGAGAGAGTCAGAAAAGGCAGTTCTCCGAATTGAGCGGTTCTGGCAGGAAATGAACATGGGATTGGAGATTCAAACTATGCTCTCAAAACCTGCTGTTATCAATGGGTTCGTTGAGATCCTTTTTAATTCTGTTGATCCCCGGGTGCTGAGGGCAACCGTTTTTCTCCTCTGTGAGCTTGGATCAAGAGACAAAACTGTGATCCAAACACTTACCCGAGTTGACTCTGATGTGGAATGCATTGTTGCTCTATTCAAGAATGGTTTGCTGGAGGCTGTTGTGTTGATACATCTGTTAAGACCTTCCACCATAAGCTTAATAGAGATGGATATGGTGGAATCCCTCCTGGTGGTTATTAAGAAGAAACAAGATGGTTTTCTTGAGATGTGTTTGAAGCCAAAAACGGCTTCTATTCTTCTACTGGGACAGATTCTTGGAAGCAGTGAAGGGAACATTGTCACTTCAATTGCCAAGACTGTAGTATCTGCAAAAGCGATTAAAAGTATTGTTGAGAGCTTGGAAGCTGAGTGGGCAGAGGAGAGAATTGCGGCAGTTGGGATCTTGTTGAGATGCATGCAGGAAGATGGAAAGTGCAGGCATACCATAGCTGACAAAGCTGAATTGGCTCCTGTTTTGGAGAGCTTCATGGGCGCGAGTGATGGAGAACGGTTTGAGATAATTAACTTCTTCTCTGAGTTAGTTAAACTAAATAGGAGGACATTCAACGAACAGGTTCTCCACATTATAAAGGATGAAGGTGCTTTTAGTACAATGCACACCCTCCTCATTTATCTACAGACAGCCCTCCAGGACCAATGTCCTGTTGTGGCTGGTCTACTTCTTCAGCTTGATCTCCTGGTGGAGCCAAGAAAGATGAGTATATACCGGGAAGAGGCAATGGATACTCTTATTTCATGCCTGAGAAACTCAGACTTCCCTGCTGCCCAAATAGCAGCTGCTGAGACAATTGTGTCGCTGCAAGGGAGGTTCTCATCTTCTGGAAAGTCCCTCACCCGGGCTTCTCTCCTTAAACGTGCTGGACTTGACAAAAGTTATAGAACTCTAATGCAAGTGGACCAACTCAGCAACAGTTCTGGAGAGTCTGAAGAAAATTTGGAAGAAGAGCAGGCAGCTGACGAATGGGAGAGAAAAATGGCATTTGTTCTGGTCAGCCATGAGTTTGGTCTGTTGTTTGAAGCTTTGGCAGAGGGCCTCAGGAGCAGAAACCAAGAGTTATTTTCATCATGCTTTCTATCAGCTACTTGGCTTATACATATGCTCACTGTTCTTCCAGACACAGGAATAAGAGGAGCAGCCCGAGTCTGCTTGCTCAAGCACTTCATATCCATGTTCAAATCTGCAAAGGGCACAGAAGAGAAAGCCCTTTCCATGCTTGCTCTGAGCAGCTTCATCCATGATCCTGAGGGACTCAATGATCTGACTTCTCACATGAAGGATATATTGAAAGGCCTGAGACAGCTTAAGAAATCATGTATATTGGCAGTTGATATGCTGAAAGTTTTCTCAGAAGGAAACAACTCTAGCATTGACTTGTGGAATCATAAAGAATTAGTTCAAGTAGATTGCAGTGCAAATGGAGAAGTGCTATCAATAGTCTGCTTCAGGGATAAGATATTTTCTGGCCATTCAGATGGAACGATAAAGGTATGGACTGGCAGAGGTAGCATTCTTCATCTCATCCATGAAACTCGAGAACATACCAAGGCAGTTACTAGCTTGGCAATTTTAGAATCAGGGGAGAGACTGTACAGCGGCTCTCTTGATAGAACTGCAAGGATATGGTCGATTGGAAGTGAAGCAATTTACTGTGTACAAATTCATGATATGAAAGATCAGGTTAACAATCTAGTTGTTGCCAATAGCATTGCATGCTTCATTCCACAGGGAGCTGGCGTCAAGGTTCACTCATGGAATGGAAAATCCAAGTTATTAAATCCGAACAAAAACGTTAAGTGCTTGACTCTTGTACATGGGAAATTATACTGTGGGTGCCATGATAACAGTATTCAGGAAATTGATTTGGCCACAGGAACACTGAGTAGCATCCAAAGTGGCACGCGAAAATTGCTGGGGAAATCAAATCCTGTTCATGCACTGCAGGTTCATGATGGAATGATATATTCAAGTAGCTTTTCCTTGGATGGAGCAGCTGTTAAGATTTGGAGTGCCACAAACTACAGTATGGTGGGATCACTTGCATCCACAATGGAAGTTCGGACTTTGGCAGTGAGCTCAGAGCTAATTTATTTGGGGAGCAAGTCAGGAACTGTGGAAATTTGGTGTAGGAAGAAGCTCATTAGAGTAGAAACACTACAAACTGGTACCAATGGCAAGGTACAATGCATGGCTGTAGATGGTGATGAAGAAGTTTTGGTAGTAGGAACTTCTGATGGCCGCATACAGGCATGGGAACTGAGTTAA 2970 0.4387 MALFEPRRSQIQKQKQPIYAESSSSPERVMAADSDDPPGGGKCTPPKDFICPITSHIFDDPVTLETGQTYERKAIQEWIDRGNSTCPITRQKLHSTQLPKTNYVLKRLIASWQEQNPGFISIHSDNPDPETDPIFNSTLPVLPSTSPNSVIISQATMDGTICELRLAITKLCMSEILRESEKAVLRIERFWQEMNMGLEIQTMLSKPAVINGFVEILFNSVDPRVLRATVFLLCELGSRDKTVIQTLTRVDSDVECIVALFKNGLLEAVVLIHLLRPSTISLIEMDMVESLLVVIKKKQDGFLEMCLKPKTASILLLGQILGSSEGNIVTSIAKTVVSAKAIKSIVESLEAEWAEERIAAVGILLRCMQEDGKCRHTIADKAELAPVLESFMGASDGERFEIINFFSELVKLNRRTFNEQVLHIIKDEGAFSTMHTLLIYLQTALQDQCPVVAGLLLQLDLLVEPRKMSIYREEAMDTLISCLRNSDFPAAQIAAAETIVSLQGRFSSSGKSLTRASLLKRAGLDKSYRTLMQVDQLSNSSGESEENLEEEQAADEWERKMAFVLVSHEFGLLFEALAEGLRSRNQELFSSCFLSATWLIHMLTVLPDTGIRGAARVCLLKHFISMFKSAKGTEEKALSMLALSSFIHDPEGLNDLTSHMKDILKGLRQLKKSCILAVDMLKVFSEGNNSSIDLWNHKELVQVDCSANGEVLSIVCFRDKIFSGHSDGTIKVWTGRGSILHLIHETREHTKAVTSLAILESGERLYSGSLDRTARIWSIGSEAIYCVQIHDMKDQVNNLVVANSIACFIPQGAGVKVHSWNGKSKLLNPNKNVKCLTLVHGKLYCGCHDNSIQEIDLATGTLSSIQSGTRKLLGKSNPVHALQVHDGMIYSSSFSLDGAAVKIWSATNYSMVGSLASTMEVRTLAVSSELIYLGSKSGTVEIWCRKKLIRVETLQTGTNGKVQCMAVDGDEEVLVVGTSDGRIQAWELS* 990
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g0341 989 CDD RING-Ubox_PUB 46 98 IPR045210 -
Vvi11g0341 989 SUPERFAMILY RING/U-box 41 117 - -
Vvi11g0341 989 ProSiteProfiles U-box domain profile. 44 119 IPR003613 GO:0004842|GO:0016567
Vvi11g0341 989 Gene3D - 172 503 IPR011989 -
Vvi11g0341 989 Gene3D - 803 989 IPR015943 GO:0005515
Vvi11g0341 989 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 12 988 - -
Vvi11g0341 989 SMART Ubox_2 48 112 IPR003613 GO:0004842|GO:0016567
Vvi11g0341 989 SMART WD40_4 947 987 IPR001680 GO:0005515
Vvi11g0341 989 SMART WD40_4 875 944 IPR001680 GO:0005515
Vvi11g0341 989 SMART WD40_4 697 734 IPR001680 GO:0005515
Vvi11g0341 989 SMART WD40_4 813 856 IPR001680 GO:0005515
Vvi11g0341 989 SMART WD40_4 739 778 IPR001680 GO:0005515
Vvi11g0341 989 ProSiteProfiles Trp-Asp (WD) repeats profile. 955 989 IPR001680 GO:0005515
Vvi11g0341 989 Gene3D - 663 802 IPR015943 GO:0005515
Vvi11g0341 989 MobiDBLite consensus disorder prediction 9 29 - -
Vvi11g0341 989 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 45 119 IPR013083 -
Vvi11g0341 989 Coils Coil 534 554 - -
Vvi11g0341 989 MobiDBLite consensus disorder prediction 1 43 - -
Vvi11g0341 989 ProSiteProfiles Trp-Asp (WD) repeats profile. 746 779 IPR001680 GO:0005515
Vvi11g0341 989 Pfam WD domain, G-beta repeat 742 778 IPR001680 GO:0005515
Vvi11g0341 989 SUPERFAMILY ARM repeat 206 502 IPR016024 -
Vvi11g0341 989 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 955 989 - -
Vvi11g0341 989 Pfam U-box domain 46 116 IPR003613 GO:0004842|GO:0016567
Vvi11g0341 989 SUPERFAMILY WD40 repeat-like 718 988 IPR036322 GO:0005515
Vvi11g0341 989 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 746 779 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi11g0341 Vvi-Chr11 2934082 2940246 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi11g0341 27 128 U-box Gene Family AT1G71020 42.991 3.60e-20 93.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g0341 - - vvi:100242430 1903.26