Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vvi11g0341 | ATGGCATTGTTTGAGCCTAGACGGAGCCAAATCCAAAAACAGAAACAGCCCATATATGCAGAATCCAGCAGTTCTCCAGAACGTGTCATGGCAGCAGATTCTGATGATCCGCCTGGTGGTGGAAAGTGTACGCCTCCGAAGGACTTTATCTGTCCCATAACCAGCCACATATTCGATGATCCGGTGACTCTTGAGACAGGTCAGACATATGAGAGGAAAGCAATTCAAGAATGGATAGATAGGGGAAACTCCACATGCCCAATCACACGCCAGAAGCTGCATAGTACCCAACTTCCCAAAACAAACTATGTACTCAAACGGCTCATTGCAAGTTGGCAAGAACAAAATCCTGGTTTTATCTCAATTCACTCTGATAATCCAGACCCAGAGACTGACCCAATCTTCAACTCTACACTGCCTGTGCTACCTTCAACTTCTCCGAACAGTGTTATAATAAGCCAAGCCACCATGGATGGGACGATTTGTGAGCTGCGACTTGCTATTACCAAGCTTTGTATGTCTGAAATTCTGAGAGAGTCAGAAAAGGCAGTTCTCCGAATTGAGCGGTTCTGGCAGGAAATGAACATGGGATTGGAGATTCAAACTATGCTCTCAAAACCTGCTGTTATCAATGGGTTCGTTGAGATCCTTTTTAATTCTGTTGATCCCCGGGTGCTGAGGGCAACCGTTTTTCTCCTCTGTGAGCTTGGATCAAGAGACAAAACTGTGATCCAAACACTTACCCGAGTTGACTCTGATGTGGAATGCATTGTTGCTCTATTCAAGAATGGTTTGCTGGAGGCTGTTGTGTTGATACATCTGTTAAGACCTTCCACCATAAGCTTAATAGAGATGGATATGGTGGAATCCCTCCTGGTGGTTATTAAGAAGAAACAAGATGGTTTTCTTGAGATGTGTTTGAAGCCAAAAACGGCTTCTATTCTTCTACTGGGACAGATTCTTGGAAGCAGTGAAGGGAACATTGTCACTTCAATTGCCAAGACTGTAGTATCTGCAAAAGCGATTAAAAGTATTGTTGAGAGCTTGGAAGCTGAGTGGGCAGAGGAGAGAATTGCGGCAGTTGGGATCTTGTTGAGATGCATGCAGGAAGATGGAAAGTGCAGGCATACCATAGCTGACAAAGCTGAATTGGCTCCTGTTTTGGAGAGCTTCATGGGCGCGAGTGATGGAGAACGGTTTGAGATAATTAACTTCTTCTCTGAGTTAGTTAAACTAAATAGGAGGACATTCAACGAACAGGTTCTCCACATTATAAAGGATGAAGGTGCTTTTAGTACAATGCACACCCTCCTCATTTATCTACAGACAGCCCTCCAGGACCAATGTCCTGTTGTGGCTGGTCTACTTCTTCAGCTTGATCTCCTGGTGGAGCCAAGAAAGATGAGTATATACCGGGAAGAGGCAATGGATACTCTTATTTCATGCCTGAGAAACTCAGACTTCCCTGCTGCCCAAATAGCAGCTGCTGAGACAATTGTGTCGCTGCAAGGGAGGTTCTCATCTTCTGGAAAGTCCCTCACCCGGGCTTCTCTCCTTAAACGTGCTGGACTTGACAAAAGTTATAGAACTCTAATGCAAGTGGACCAACTCAGCAACAGTTCTGGAGAGTCTGAAGAAAATTTGGAAGAAGAGCAGGCAGCTGACGAATGGGAGAGAAAAATGGCATTTGTTCTGGTCAGCCATGAGTTTGGTCTGTTGTTTGAAGCTTTGGCAGAGGGCCTCAGGAGCAGAAACCAAGAGTTATTTTCATCATGCTTTCTATCAGCTACTTGGCTTATACATATGCTCACTGTTCTTCCAGACACAGGAATAAGAGGAGCAGCCCGAGTCTGCTTGCTCAAGCACTTCATATCCATGTTCAAATCTGCAAAGGGCACAGAAGAGAAAGCCCTTTCCATGCTTGCTCTGAGCAGCTTCATCCATGATCCTGAGGGACTCAATGATCTGACTTCTCACATGAAGGATATATTGAAAGGCCTGAGACAGCTTAAGAAATCATGTATATTGGCAGTTGATATGCTGAAAGTTTTCTCAGAAGGAAACAACTCTAGCATTGACTTGTGGAATCATAAAGAATTAGTTCAAGTAGATTGCAGTGCAAATGGAGAAGTGCTATCAATAGTCTGCTTCAGGGATAAGATATTTTCTGGCCATTCAGATGGAACGATAAAGGTATGGACTGGCAGAGGTAGCATTCTTCATCTCATCCATGAAACTCGAGAACATACCAAGGCAGTTACTAGCTTGGCAATTTTAGAATCAGGGGAGAGACTGTACAGCGGCTCTCTTGATAGAACTGCAAGGATATGGTCGATTGGAAGTGAAGCAATTTACTGTGTACAAATTCATGATATGAAAGATCAGGTTAACAATCTAGTTGTTGCCAATAGCATTGCATGCTTCATTCCACAGGGAGCTGGCGTCAAGGTTCACTCATGGAATGGAAAATCCAAGTTATTAAATCCGAACAAAAACGTTAAGTGCTTGACTCTTGTACATGGGAAATTATACTGTGGGTGCCATGATAACAGTATTCAGGAAATTGATTTGGCCACAGGAACACTGAGTAGCATCCAAAGTGGCACGCGAAAATTGCTGGGGAAATCAAATCCTGTTCATGCACTGCAGGTTCATGATGGAATGATATATTCAAGTAGCTTTTCCTTGGATGGAGCAGCTGTTAAGATTTGGAGTGCCACAAACTACAGTATGGTGGGATCACTTGCATCCACAATGGAAGTTCGGACTTTGGCAGTGAGCTCAGAGCTAATTTATTTGGGGAGCAAGTCAGGAACTGTGGAAATTTGGTGTAGGAAGAAGCTCATTAGAGTAGAAACACTACAAACTGGTACCAATGGCAAGGTACAATGCATGGCTGTAGATGGTGATGAAGAAGTTTTGGTAGTAGGAACTTCTGATGGCCGCATACAGGCATGGGAACTGAGTTAA | 2970 | 0.4387 | MALFEPRRSQIQKQKQPIYAESSSSPERVMAADSDDPPGGGKCTPPKDFICPITSHIFDDPVTLETGQTYERKAIQEWIDRGNSTCPITRQKLHSTQLPKTNYVLKRLIASWQEQNPGFISIHSDNPDPETDPIFNSTLPVLPSTSPNSVIISQATMDGTICELRLAITKLCMSEILRESEKAVLRIERFWQEMNMGLEIQTMLSKPAVINGFVEILFNSVDPRVLRATVFLLCELGSRDKTVIQTLTRVDSDVECIVALFKNGLLEAVVLIHLLRPSTISLIEMDMVESLLVVIKKKQDGFLEMCLKPKTASILLLGQILGSSEGNIVTSIAKTVVSAKAIKSIVESLEAEWAEERIAAVGILLRCMQEDGKCRHTIADKAELAPVLESFMGASDGERFEIINFFSELVKLNRRTFNEQVLHIIKDEGAFSTMHTLLIYLQTALQDQCPVVAGLLLQLDLLVEPRKMSIYREEAMDTLISCLRNSDFPAAQIAAAETIVSLQGRFSSSGKSLTRASLLKRAGLDKSYRTLMQVDQLSNSSGESEENLEEEQAADEWERKMAFVLVSHEFGLLFEALAEGLRSRNQELFSSCFLSATWLIHMLTVLPDTGIRGAARVCLLKHFISMFKSAKGTEEKALSMLALSSFIHDPEGLNDLTSHMKDILKGLRQLKKSCILAVDMLKVFSEGNNSSIDLWNHKELVQVDCSANGEVLSIVCFRDKIFSGHSDGTIKVWTGRGSILHLIHETREHTKAVTSLAILESGERLYSGSLDRTARIWSIGSEAIYCVQIHDMKDQVNNLVVANSIACFIPQGAGVKVHSWNGKSKLLNPNKNVKCLTLVHGKLYCGCHDNSIQEIDLATGTLSSIQSGTRKLLGKSNPVHALQVHDGMIYSSSFSLDGAAVKIWSATNYSMVGSLASTMEVRTLAVSSELIYLGSKSGTVEIWCRKKLIRVETLQTGTNGKVQCMAVDGDEEVLVVGTSDGRIQAWELS* | 990 |
Showing 1 to 1 of 1 entries
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vvi11g0341 | 989 | CDD | RING-Ubox_PUB | 46 | 98 | IPR045210 | - | |
| Vvi11g0341 | 989 | SUPERFAMILY | RING/U-box | 41 | 117 | - | - | |
| Vvi11g0341 | 989 | ProSiteProfiles | U-box domain profile. | 44 | 119 | IPR003613 | GO:0004842|GO:0016567 | |
| Vvi11g0341 | 989 | Gene3D | - | 172 | 503 | IPR011989 | - | |
| Vvi11g0341 | 989 | Gene3D | - | 803 | 989 | IPR015943 | GO:0005515 | |
| Vvi11g0341 | 989 | PANTHER | RING-TYPE E3 UBIQUITIN TRANSFERASE | 12 | 988 | - | - | |
| Vvi11g0341 | 989 | SMART | Ubox_2 | 48 | 112 | IPR003613 | GO:0004842|GO:0016567 | |
| Vvi11g0341 | 989 | SMART | WD40_4 | 947 | 987 | IPR001680 | GO:0005515 | |
| Vvi11g0341 | 989 | SMART | WD40_4 | 875 | 944 | IPR001680 | GO:0005515 | |
| Vvi11g0341 | 989 | SMART | WD40_4 | 697 | 734 | IPR001680 | GO:0005515 |
Showing 1 to 10 of 25 entries
Duplication type information
Functional genes information
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vvi11g0341 | - | - | vvi:100242430 | 1903.26 |
Showing 1 to 1 of 1 entries