Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g0338 ATGAATCGAGGTGTTCTGCAGAGCTCGCCGGTGCAACAAATGATGGCCGGAAACCCTAACTGGTGGAACATTAATAGCATGAGGCCACCACCTCAACAACCCCCTCCTTTCTTGCCTTCTCCTTCCAATCTCTTCCCTCAATATACACCAACTTCTTCACTTCCTATGTCAGCCTCTTGGCATGATAACCAGGAGCTTCCAGAGTCATGGAGCCAACTACTCCTGGGTGGATTGGTGGGTGAAGAAGAAAAGAGTGGTATGAGCCATTTCCAAGCTAAGAAGTTGGAGAATTGGGAGGACCAAGTGTTGCATCAGGCTACAAACCCTCCTGTTGTAGATATCAAGCAAGAAAACTCTGCAAGCAGCTACATGTATGGACACGGAAATGAAGACTTCCAGGCTACAAAACCTACTTGGTCTCAGATAATGCCTGCTTCATCCCCCAAGTCTTGTGTGACAAGTTTCAGCAGCAACATGCTAGATTTTTCTAGCAACAAAGCCGATGTGAAGCACCCACAGCCGGATCGTTCTTCAGAGTGTAACAGCACTGCAACTGGTGGGGCACTTAAGAAAGCTAGGGTTCAAGCTTCTCCAACCCAGCCTACCTTCAAGGTGAGGAAGGAAAAGTTAGGTGACAGAATTACAGCCCTTCACCAGCTAGTATCCCCATTTGGGAAGACTGACACAGCTTCTGTCTTGTTAGAAGCTATTGGTTATATCAGATTCCTCCAGAGTCAAATTGAGGCTCTCAGCTTACCGTACTTGGGCAGTGGATCAGGAAATATGAGGCAGCAACCGTCTTCAGTTCAAGGGGAGAGGAATTGTATATTTCCTGAAGACCCTGGCCAGCTGTTGAATGATAACGGCATGAAGAGGAAAGGAGCTTCCGACCAGGAATCTCATGAAGAACCAAAGAAAGACCTGAGAAGTAGAGGGTTGTGTCTGGTGCCTGTTTCATGCACACTGCAAGTTGGGAGCGACAATGGAGCAGATTATTGGGCTCCGGCTCTGGGCGGTGGCTTTCGATGA 1029 0.481 MNRGVLQSSPVQQMMAGNPNWWNINSMRPPPQQPPPFLPSPSNLFPQYTPTSSLPMSASWHDNQELPESWSQLLLGGLVGEEEKSGMSHFQAKKLENWEDQVLHQATNPPVVDIKQENSASSYMYGHGNEDFQATKPTWSQIMPASSPKSCVTSFSSNMLDFSSNKADVKHPQPDRSSECNSTATGGALKKARVQASPTQPTFKVRKEKLGDRITALHQLVSPFGKTDTASVLLEAIGYIRFLQSQIEALSLPYLGSGSGNMRQQPSSVQGERNCIFPEDPGQLLNDNGMKRKGASDQESHEEPKKDLRSRGLCLVPVSCTLQVGSDNGADYWAPALGGGFR* 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g0338 342 MobiDBLite consensus disorder prediction 292 308 - -
Vvi11g0338 342 MobiDBLite consensus disorder prediction 164 200 - -
Vvi11g0338 342 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 194 243 IPR011598 GO:0046983
Vvi11g0338 342 MobiDBLite consensus disorder prediction 23 44 - -
Vvi11g0338 342 Gene3D - 203 253 IPR036638 GO:0046983
Vvi11g0338 342 MobiDBLite consensus disorder prediction 278 308 - -
Vvi11g0338 342 MobiDBLite consensus disorder prediction 28 43 - -
Vvi11g0338 342 CDD bHLH_AtbHLH_like 201 251 IPR045239 -
Vvi11g0338 342 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 71 324 - -
Vvi11g0338 342 FunFam transcription factor bHLH68 isoform X1 201 254 - -
Vvi11g0338 342 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 204 254 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi11g0338 Vvi-Chr11 2919317 2922241 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi11g0338 1 284 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G29100 48.045 2.60e-72 226
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g0338 - - vvi:100249096 675.626