Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g0336 ATGTCTAAGCAACTGGAGCATGATTACATAGGCTTGTCAGAGGTTTCTTCAATGGAAAGCTCTGAGAAGCTCACCACTGATTCGGAGGGCAGCAATGGTCTCAACTTGAAGGCCACAGAGCTGAGGCTGGGTTTGCCTGGTTCTGAGTCGCCTGAGAGGATTGACTCAGTTGGGGGTTTGGATAAGAATGGATACCCACTTGGTGTGCTGAAGAACTTGGTCTCTGGTGCCAAGAGAGGCTTCTCTGACGCCATTGATGGTGGTTCCGGCAAGTGGGTCTTCTCCGGGAGTGGTGGATCCGAGACTGATTTGACCAAAGGTGGTGGCTTGTTCTCTCCCAGAGGTGGAAATGGTGGTGGGAAGCATCTTGGTGGGTCGGAGAGCAACAATCAGCACTCGAGTTTGGGTACTCCAGTTAAGAACGACGTCGTTCCGCAGTCGCCAAAGCCTATGCATGAGAAAAAGCCTCAGATTTCTGCTCCTGCCGCAAAAGCACAGGTAGTAGGGTGGCCACCAATTCGGTCTTTCCGGAAGAATTCAATGGCATCTAATCTTCCAAAGAATGATGAGGATGCGGAAGGCAAGTTAGGATCCGGGTGTCTTTACGTCAAGGTCAGTATGGATGGTGCTCCATACCTTAGGAAAGTTGATCTCAAATTATACTCCACCTATATGGAACTCTCTTCAGCTTTAGAAAAGATGTTCAGCTGCTTTACAATTGGGCAATGCGGTTCTAATGGAGTTCCTATTCGAGATGGTCTGAGTGAGAGTCGACTAATGGATCTTCTCCATGGCTCTGAGTACGTACTCACTTATGAAGACAAGGACGGTGACTGGATGCTAGTTGGTGATGTTCCTTGGGAAATGTTTACAGACTCTTGCAAGAGAATGAGGATAATGAAGAGTTCAGAAGCCATTGGATTAGCCCCAAGGGCAATGGAGAAATGCAAGAGTCGCAACTAG 963 0.4839 MSKQLEHDYIGLSEVSSMESSEKLTTDSEGSNGLNLKATELRLGLPGSESPERIDSVGGLDKNGYPLGVLKNLVSGAKRGFSDAIDGGSGKWVFSGSGGSETDLTKGGGLFSPRGGNGGGKHLGGSESNNQHSSLGTPVKNDVVPQSPKPMHEKKPQISAPAAKAQVVGWPPIRSFRKNSMASNLPKNDEDAEGKLGSGCLYVKVSMDGAPYLRKVDLKLYSTYMELSSALEKMFSCFTIGQCGSNGVPIRDGLSESRLMDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTDSCKRMRIMKSSEAIGLAPRAMEKCKSRN* 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g0336 320 Gene3D - 196 313 - -
Vvi11g0336 320 SUPERFAMILY CAD & PB1 domains 198 301 - -
Vvi11g0336 320 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 34 307 IPR003311 GO:0005634|GO:0006355
Vvi11g0336 320 MobiDBLite consensus disorder prediction 123 141 - -
Vvi11g0336 320 Pfam AUX/IAA family 39 311 IPR033389 -
Vvi11g0336 320 ProSiteProfiles PB1 domain profile. 200 302 IPR000270 GO:0005515
Vvi11g0336 320 MobiDBLite consensus disorder prediction 106 164 - -
Vvi11g0336 320 MobiDBLite consensus disorder prediction 16 35 - -
Vvi11g0336 320 MobiDBLite consensus disorder prediction 16 37 - -
Vvi11g0336 320 FunFam Auxin-responsive protein 195 312 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi11g0336 Vvi-Chr11 2881794 2885036 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi11g0336 142 305 B3 DNA Binding Superfamily AT3G61830 29.091 1.32e-07 51.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Vvi11g0336 AUX_IAA 1.3e-88 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g0336 K14484 - vvi:100254204 639.802