Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g0328 ATGGAACGGATCGTCGGCGGAAAGTACAAGCTAGGGCGCAAGATCGGCAGCGGATCGTTCGGTGAAATTTATCTCGCTACGCACGTCGATACGTTTGAGATCGTAGCTGTGAAGATTGAGAACAGTAAGACAAAGCATCCACAACTGCTTTATGAAGCAAAGTTATACAATCTTCTTCAAGGAGGAAGTGGAATTCCTGGAATAAGATGGTCTGGGATAGATGGCGATGACAATATCCTAGTTCTTGATTTGCTTGGGCCTAGTCTTGAAGATCTGTTTGTGTATTGTGGGAGGAAGTTCTCCTTGAAGACAGTCTTAATGTTGGCTGATCAAATGATTACAAGAATCGAATATGTGCACTCTAAAGGATTTTTACATAGAGATATCAAGCCCGACAACTTCCTCATGGGTCTGGGTCGTAAAGCAAATCAGGTTTACATTATAGATTTTGGGCTTGCTAAAAGGTATCGGGACTCTACAACAAATCGCCATATTCCTTACAGGGAGAATAAGAACTTAACTGGAACTGCACGTTATGCAAGTTGCAATACACATCTTGGAATCGAGCAAAGCCGGAGGGATGATTTGGAGTCGCTTGGATATGTACTTCTATATTTTTTGAGAGGAAGCCTTCCATGGCAGGGTTTAAAGGCTGCCACAAAGAAGCAAAAGTATGACAAAATATGTGAGAAGAAGTTATCAACTCCAATTGAGGTTCTGTGTAAATCTCATCCAGTGGAATTTGCATCATACTTCCATTATTGCCACTCGTTGACATTTGATCAGCGACCTGATTATGGATTCTTAAAGCGTCTTTTCCGTGACTTGTTTACTCGAGAAGGATATGAATTTGATTACATATTTGATTGGACAATCCTGAAGTACCAGCAAACCCAGAAGAGTAGAACTCAACCTCAATTATCTCCAGCAGCTGGAGGGAGCAGCAGCCGAGCAATGGCAATGGATGTAGATAGGCATCAAGGGGGCATTAATGCTTCTTATTCAGCTGAGGCTACAGAGCGCATTAGATCAAGCAATGCTGCTGCTAGTTCTGGCATACGCATGCAATTTAAGTCAACAGGCAAAAATTTGAGTTCTGAGAGTCCAGCTGAGAAGAATATTGTGAGCGATGCACACATGCCATCTACTTCATTTTCTCTTGCTGGTTTTTCAAAAAGAAATGCTCCAAAACCCATGTTACCAACTGAAACAACAAACACTGCACATCATGGACATACCAACAAAATTGGTCCTTCAAGCAGCTGGATTTCATCTTTACAGCGTATTTCTTCTTCCAAGTGA 1302 0.4186 MERIVGGKYKLGRKIGSGSFGEIYLATHVDTFEIVAVKIENSKTKHPQLLYEAKLYNLLQGGSGIPGIRWSGIDGDDNILVLDLLGPSLEDLFVYCGRKFSLKTVLMLADQMITRIEYVHSKGFLHRDIKPDNFLMGLGRKANQVYIIDFGLAKRYRDSTTNRHIPYRENKNLTGTARYASCNTHLGIEQSRRDDLESLGYVLLYFLRGSLPWQGLKAATKKQKYDKICEKKLSTPIEVLCKSHPVEFASYFHYCHSLTFDQRPDYGFLKRLFRDLFTREGYEFDYIFDWTILKYQQTQKSRTQPQLSPAAGGSSSRAMAMDVDRHQGGINASYSAEATERIRSSNAAASSGIRMQFKSTGKNLSSESPAEKNIVSDAHMPSTSFSLAGFSKRNAPKPMLPTETTNTAHHGHTNKIGPSSSWISSLQRISSSK* 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g0328 433 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Vvi11g0328 433 SUPERFAMILY Protein kinase-like (PK-like) 4 290 IPR011009 -
Vvi11g0328 433 CDD STKc_CK1_delta_epsilon 8 282 - -
Vvi11g0328 433 MobiDBLite consensus disorder prediction 398 433 - -
Vvi11g0328 433 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Vvi11g0328 433 MobiDBLite consensus disorder prediction 385 433 - -
Vvi11g0328 433 SMART serkin_6 9 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi11g0328 433 Pfam Protein kinase domain 9 227 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi11g0328 433 ProSiteProfiles Protein kinase domain profile. 9 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi11g0328 433 Gene3D Transferase(Phosphotransferase) domain 1 1 340 - -
Vvi11g0328 433 MobiDBLite consensus disorder prediction 359 378 - -
Vvi11g0328 433 FunFam Casein kinase I isoform delta-like 1 340 - -
Vvi11g0328 433 PANTHER CASEIN KINASE-RELATED 7 348 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi11g0328 Vvi-Chr11 2825909 2829939 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi11g0328 9 215 EF-hand Containing Proteins AT4G23650 29.108 7.79e-14 71.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Vvi11g0328 Pkinase 1e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g0328 K08960 - vvi:100247344 846.269