Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g0325 ATGGGGTGTGTTTATTCGAGGTCATGTATTGGGGAGGTTTGTACTCCAAGACATGCAAGAGTTAAAGAAACTGAAAATGCGAGAGCAGGTGCAGAGCTTCCCGTGTTCTCTCCTGCTTCTTCAGATGGGGAAGATGGGGAAATTAGAGATCAGTTGAATCAGTTGAGTTTAACTAGGGATTCTGAAGTAGGCATCACTAGGCTTTCTAGGGTTTCTTCTCAGTTTCTACCCCATGATGGGTCACGAACTGTTAAAATTCCATCGGGAAACTATGAATTACGATTTTCGTTTCTGTCACAGAGAGGATATTATCCTGATGCTCTTGATAAAGCTAACCAAGACAGTTTTTGTATCCACACCCCTTTAGGGACAAACCCTGACGATCATTTTTTTGGGGTTTTTGATGGGCATGGAGAATTCGGTGCTCAGTGCTCACAGTTTGTGAAGCAAAAATTATGTGAAAATTTGCTTAGGAATAGTAGGTTCCATATGGATGCAATTGAGGCATGCCATGCCGCATTCTTGACGACAAATTCACAGTTACATGCTGATAGTTTGGATGATAGCATGAGCGGCACAACTGCAATAACAGTATTGGTTCGTGGTCGGACTATATATGTTGCTAACTCAGGGGATTCCAGAGCTGTTATAGCAGAAAGAAAAGGGAAAGAAATTGTGGCTGTTGATTTATCAATTGATCAAACACCATTTCGGGCTGATGAACTTGAAAGAGTTAAGCTTTGTGGAGCGAGGGTCCTCACTTTGGATCAGATAGAAGGGCTGAAGAACCCAGATGTGCAGTGTTGGGGCACTGAAGAGGGGGATGATGGCGATCCTCCTAGACTATGGGTACCCAATGGGATGTATCCTGGCACGGCTTTTACCCGAAGTATTGGCGATTCAATTGCTGAGTCAATTGGGGTGGTTGCTAACCCTGAAATTGTTGTTCTGGAGCTCACACCAGATCATCCTTTCTTTGTGCTAGCTAGCGATGGGGTGTTTGAGTTCCTTTCCAGCCAAACTGTTGTTGACATGGTTACAAAGTTTAAGGATCCCCGTGATGCTTGTGCTGCAATTGTTGCTGAATCTTATCGGCTTTGGCTACAGTATGAAACTCGCACAGATGACATTACTGTGATAGTTGTGCATATTAATGGGCTAACTGATCCTGATGTTGGACAATCAGCAAATCCTGGTGCTATTTCAAGACCTCCTGTTCCACAAGTCGTGGAAGTAACAGGATCTGAATCTCCTTCAACCTTGAGCTGGAATTCTAGGAATCATCGGGTAAGGCATGATTTATCACGGGCACGTCTTCGTGCCATTGAAAGTTCTCTGGAGAATGGTCAAATTTGGGTTCCTCCATCTCCAGCTCACAGGAAGACATGGGAAGAAGAGGCACACATTGAGCGGGCATTGCATGACCATTTCCTATTCAGGAAGCTTACTGACTCTCAGTGCCATGTCTTGTTGGATTGCATGCAACGAGTTGAAGTTCAATCAGGGGATGTTGTAGTGAAACAGGGTGGTGAAGGTGACTGCTTTTATGTTGTTGGCAGTGGAGAATTTGAGGTCTTGGCAACCCAGGAAGAAAAAAATGGCGAGGTGACTAGGGTTCTGCAACAGTATACAGCTGAAAAGTTATCATCCTTTGGCGAGCTGGCACTCATGTATAACAAACCGCTACAGGCATCTGTTCGTGCTGTGACAAATGGAACTCTTTGGGCTTTGAAAAGAGAAGATTTTCGAGGAATTTTGATGTCTGAATTTTCAAATTTGTCATCCTTGAAGTTGCTTCGGTCAGTAGATCTTCTTTCAAGGTTGACAATCTTACAGTTGAGCCACATTGCAGATTCTCTTTCTGAAGTGTCCTTCTCTGATGGGCAAACTATAGTTGACAAAAATGAGGGTCCTGTTGCTTTGTATATCATCCAAAAGGGACAAGTGAGAATCACTTTTGATCCAGACTCAATAAGGAGTCCAAGCTTCGGGAGCCTTGTATCTGACAATCAAAAGCAGGATGATGATACAGAAAGCAGTACAGAGTTTGTAGTGAAGACTGAGGGAAGCTATTTTGGTGAATGGGCACTTCTTGGTGAAAATATTGGCTCTTTTAGTGCAGTTGCTATGGGTGATGTGGTGTGTGCTGTTTTAACAAAGGAAAAGTTTGATGCTGTTGTTGGTCCATTGGCAAAGCTGTCACAGGGTGATGAAAAGTCAAGAGACCATTCAAGAGACTATTCTTCAAGCCTCCCTAAGGAATCTGTCAAAAATATTGATCCTTCAACTCTTACGAAAGTTCAGCCTTCTGACTTGGAGTGGAGAACCTGTTTATATTCCACTGACTGCAGTGAGATTGGGCTTGTATTGTTGAGAGATTCAGAAAATTTGCTAAGCTTGAAAAGGTTTTCAAAGCAGAAGATCAAAAGGCTTGGGAAGGAAGCACAGGTCTTAAAGGAGAAGAATCTAATGATGAGTATGGCTCCTTCAGCTTGTGTGCCACAGGTTCTATGCACTATTGCTGACCAGAACCATGCCAGTATCCTGCTGAATACATGTCTTGCCTGCCCATTTGCTTCGATACTTCACACTCCACTAGATGAACCATCTGCACGGTTCTGTGCTGCCTCTGTTGTTATTGCCTTGGAAAATTTACACAAGAATGGTATTCTCTACAGAGGTGTGTCTCCTGATGTTCTAATGTTTGATCACACAGGACATTTGCAGCTTGTAGACTTCAGATTTGGGAAGAAGTTGGCTGATGAAAGAACATTTACAATATGTGGGATGGCAGACTCTTTAGCACCAGAGATAGTCCAAGGAAAAGGACATGGCTTTCCTGCTGACTGGTGGGCACTGGGAGTCTTGATCTATTTTATGCTACAAGGTGAAATGCCATTTGGATCATGGAGAGAAAGTGAGCTTGATACATTTGCAAAGATTGCTAGGGGACAGCTAAACCTTCCGTGCACCTTCAGTCCTGAAGCTGTTGATCTCATAACAAAGTTACTTGAAGTTGATGAAAGCACAAGACTTGGAAGCCAAAATCCAGATTCTGTCAAAAGCCATAAGTGGTTTGATGGGATTGATTGGAAGAGACTGACAGATTCTAGCTTTCCTGTTCCACATGAGATCACATCTCGAATAGCTCAACATCTGGAAAATCACACAGAGGACTATACCATTCATTCACTTTCCCCATCTCGAGACCCAGAAGAACTTAATACTCCAGAATGGCTTGAAGAGTGGTAG 3252 0.433 MGCVYSRSCIGEVCTPRHARVKETENARAGAELPVFSPASSDGEDGEIRDQLNQLSLTRDSEVGITRLSRVSSQFLPHDGSRTVKIPSGNYELRFSFLSQRGYYPDALDKANQDSFCIHTPLGTNPDDHFFGVFDGHGEFGAQCSQFVKQKLCENLLRNSRFHMDAIEACHAAFLTTNSQLHADSLDDSMSGTTAITVLVRGRTIYVANSGDSRAVIAERKGKEIVAVDLSIDQTPFRADELERVKLCGARVLTLDQIEGLKNPDVQCWGTEEGDDGDPPRLWVPNGMYPGTAFTRSIGDSIAESIGVVANPEIVVLELTPDHPFFVLASDGVFEFLSSQTVVDMVTKFKDPRDACAAIVAESYRLWLQYETRTDDITVIVVHINGLTDPDVGQSANPGAISRPPVPQVVEVTGSESPSTLSWNSRNHRVRHDLSRARLRAIESSLENGQIWVPPSPAHRKTWEEEAHIERALHDHFLFRKLTDSQCHVLLDCMQRVEVQSGDVVVKQGGEGDCFYVVGSGEFEVLATQEEKNGEVTRVLQQYTAEKLSSFGELALMYNKPLQASVRAVTNGTLWALKREDFRGILMSEFSNLSSLKLLRSVDLLSRLTILQLSHIADSLSEVSFSDGQTIVDKNEGPVALYIIQKGQVRITFDPDSIRSPSFGSLVSDNQKQDDDTESSTEFVVKTEGSYFGEWALLGENIGSFSAVAMGDVVCAVLTKEKFDAVVGPLAKLSQGDEKSRDHSRDYSSSLPKESVKNIDPSTLTKVQPSDLEWRTCLYSTDCSEIGLVLLRDSENLLSLKRFSKQKIKRLGKEAQVLKEKNLMMSMAPSACVPQVLCTIADQNHASILLNTCLACPFASILHTPLDEPSARFCAASVVIALENLHKNGILYRGVSPDVLMFDHTGHLQLVDFRFGKKLADERTFTICGMADSLAPEIVQGKGHGFPADWWALGVLIYFMLQGEMPFGSWRESELDTFAKIARGQLNLPCTFSPEAVDLITKLLEVDESTRLGSQNPDSVKSHKWFDGIDWKRLTDSSFPVPHEITSRIAQHLENHTEDYTIHSLSPSRDPEELNTPEWLEEW* 1084
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g0325 1083 Coils Coil 801 821 - -
Vvi11g0325 1083 SMART PP2C_4 94 382 IPR001932 -
Vvi11g0325 1083 SUPERFAMILY cAMP-binding domain-like 458 588 IPR018490 -
Vvi11g0325 1083 Gene3D Jelly Rolls 453 592 IPR014710 -
Vvi11g0325 1083 ProSiteProfiles cAMP/cGMP binding motif profile. 478 587 IPR000595 -
Vvi11g0325 1083 Pfam Protein phosphatase 2C 123 363 IPR001932 -
Vvi11g0325 1083 FunFam Protein phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein 452 592 - -
Vvi11g0325 1083 Gene3D Phosphorylase Kinase; domain 1 779 856 - -
Vvi11g0325 1083 PRINTS cAMP-dependent protein kinase signature 499 513 - -
Vvi11g0325 1083 PRINTS cAMP-dependent protein kinase signature 514 528 - -
Vvi11g0325 1083 PRINTS cAMP-dependent protein kinase signature 549 558 - -
Vvi11g0325 1083 PRINTS cAMP-dependent protein kinase signature 723 735 - -
Vvi11g0325 1083 MobiDBLite consensus disorder prediction 735 750 - -
Vvi11g0325 1083 CDD PP2Cc 110 384 IPR001932 -
Vvi11g0325 1083 ProSiteProfiles Protein kinase domain profile. 753 1026 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi11g0325 1083 MobiDBLite consensus disorder prediction 734 755 - -
Vvi11g0325 1083 FunFam Protein phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein 594 743 - -
Vvi11g0325 1083 Coils Coil 526 546 - -
Vvi11g0325 1083 SUPERFAMILY PP2C-like 82 386 IPR036457 -
Vvi11g0325 1083 CDD CAP_ED 478 587 IPR000595 -
Vvi11g0325 1083 ProSiteProfiles cAMP/cGMP binding motif profile. 604 729 IPR000595 -
Vvi11g0325 1083 PANTHER CYCLIC NUCLEOTIDE-DEPENDENT PROTEIN KINASE 466 1043 - -
Vvi11g0325 1083 FunFam Phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein 89 386 - -
Vvi11g0325 1083 ProSiteProfiles PPM-type phosphatase domain profile. 94 384 IPR001932 -
Vvi11g0325 1083 Pfam Cyclic nucleotide-binding domain 497 588 IPR000595 -
Vvi11g0325 1083 Pfam Cyclic nucleotide-binding domain 623 726 IPR000595 -
Vvi11g0325 1083 SMART cnmp_10 478 602 IPR000595 -
Vvi11g0325 1083 SMART cnmp_10 604 742 IPR000595 -
Vvi11g0325 1083 Pfam Protein kinase domain 789 1026 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi11g0325 1083 SUPERFAMILY Protein kinase-like (PK-like) 759 1066 IPR011009 -
Vvi11g0325 1083 Gene3D Transferase(Phosphotransferase) domain 1 857 1044 - -
Vvi11g0325 1083 Gene3D - 89 385 IPR036457 -
Vvi11g0325 1083 Gene3D Jelly Rolls 593 742 IPR014710 -
Vvi11g0325 1083 SMART serkin_6 780 1026 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi11g0325 1083 SUPERFAMILY cAMP-binding domain-like 596 729 IPR018490 -
Vvi11g0325 1083 MobiDBLite consensus disorder prediction 1060 1083 - -
Vvi11g0325 1083 ProSitePatterns PPM-type phosphatase domain signature. 130 138 IPR000222 GO:0043169
Vvi11g0325 1083 CDD CAP_ED 604 735 IPR000595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi11g0325 Vvi-Chr11 2787458 2800657 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi11g0325 1 1083 PP2C-type Phosphatase Gene Family AT2G20050 70.417 0.0 1544
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_PKA-PKG Vvi11g0325 Pkinase 4.9e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g0325 - - vvi:100266345 2180.22