Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g0324 ATGCCACTTCCAATCCACCCATTTCTTGGGTTCATCTCAGATTTCAACCAGAACACCTCTCTAATTTTACATGTCTTGGTGGAATGCTTGTCGGGTAAGCGTGGAATTCTGGGCAAGTCTCGAGCTTCTGTCTTGGCGATGAATCGGTGGAGTTCGATTATCTGGTTTCTGCTTTCTGGGTTATTGTTCAATGTTGAATCACAGGCTGCCCCAGGACAGGAGAACTTCTCTTCACAAGATGCTGTTACTGCTTTTAAACCAAGCCTTGCTGTGGTGATTGGAATCCTGGCTGTGATGTTTTTGTTAACATTTATTCTTCTTGTGTATGCAAAACTCTGTCACAGGGCGTCGAACAGTGATCGGGAAAATCAGCAGGGGCTTACCAGATCAGAGTCTCGGTTTTCTGGAATCGACAAAACTGTAATTGAGTCACTTCCTTTCTTCAGATTCTGTTCGCTTAAAGGGTCAAAGGAAGGGCTTGAATGTGCAGTCTGCCTATCAAAATTTGAAGACATAGAAATTCTCAGGCTGTTGCCTAAGTGCAAACATGCCTTCCACATTGACTGTGTTGATCAGTGGCTTGAGAAGCATTCAAGCTGCCCTCTTTGTAGGCACAAGGTCAGCGCCGAGGACCTTGCAATCTTAACGTATTCGAATAGTTTGAGGTTCTTATGGAACCAGTCTGAGCTAAGAGAGAACTCAAATTTGGAGCTCTTTGTTCAAAGAGAGGAAGATCATCATGGGTCTTCCAGGTTCAGCATTGGAAGCAGCTTTAGGAAGGTTGAAAAGGGTGTGAAGGAAGAAGAATCAGTACTAATCCAAGAAGAAGAAGATGATAATGATGATGAAAAAATCTTGCACAAAATCAATCACAAGATTATTGTATCCGATGTTGTCCTCAAGAACAGATGGAGCAGTGTGAGCTCTTCAGACTTGATGTATCTGAATTCAGAACTGGTTCATGCCATGTCAAGCGATAGATTTGCTTCTTTGGATTCAAACAACTCCGCAATGGGAAGACCAATTGAGGACTGGGAAGTCATGAAGATCAAGGAGGAAATAGAGAGGAAGAGAATTTTCGAAAGCAGGGTCAGTAGAATCAACCATAGCAACCCAGTTTCATCTTCAGGCCTTCCTTCTACTTCAAAAACTGAAGCAAACTCAGGTCATGCTTCACGCTTCTTGCATCCCACCGAAAAGAGATCAATGTCAGAGATCACAGCTTGTTCAAGATACGCAGATTTCAGTACAAAGAATAGAATTAGGGAGTCTTCTTTAGCTCAAAATAACATAAAGGAGGAGAGAATGAGGCGGCTTTGGTTGCCAATTGCAAGAAGAACAGTTGAATGGTTTGCCAATAGAGAAGGGTCTCAACAGTCTCAAAACACAAAACAGGCACCAGATGTATGA 1410 0.4277 MPLPIHPFLGFISDFNQNTSLILHVLVECLSGKRGILGKSRASVLAMNRWSSIIWFLLSGLLFNVESQAAPGQENFSSQDAVTAFKPSLAVVIGILAVMFLLTFILLVYAKLCHRASNSDRENQQGLTRSESRFSGIDKTVIESLPFFRFCSLKGSKEGLECAVCLSKFEDIEILRLLPKCKHAFHIDCVDQWLEKHSSCPLCRHKVSAEDLAILTYSNSLRFLWNQSELRENSNLELFVQREEDHHGSSRFSIGSSFRKVEKGVKEEESVLIQEEEDDNDDEKILHKINHKIIVSDVVLKNRWSSVSSSDLMYLNSELVHAMSSDRFASLDSNNSAMGRPIEDWEVMKIKEEIERKRIFESRVSRINHSNPVSSSGLPSTSKTEANSGHASRFLHPTEKRSMSEITACSRYADFSTKNRIRESSLAQNNIKEERMRRLWLPIARRTVEWFANREGSQQSQNTKQAPDV* 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g0324 469 Pfam Ring finger domain 161 204 IPR001841 -
Vvi11g0324 469 MobiDBLite consensus disorder prediction 370 399 - -
Vvi11g0324 469 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 72 455 - -
Vvi11g0324 469 FunFam RING-H2 finger protein ATL43 137 211 - -
Vvi11g0324 469 CDD RING-H2_EL5-like 161 204 - -
Vvi11g0324 469 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 136 212 IPR013083 -
Vvi11g0324 469 SMART ring_2 162 203 IPR001841 -
Vvi11g0324 469 SUPERFAMILY RING/U-box 141 208 - -
Vvi11g0324 469 ProSiteProfiles Zinc finger RING-type profile. 162 204 IPR001841 -
Vvi11g0324 469 MobiDBLite consensus disorder prediction 370 391 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi11g0324 Vvi-Chr11 2778391 2781201 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi11g0324 54 469 C3H Transcription Factor Family AT4G28890 49.775 2.14e-124 367
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g0324 K10664 - vvi:100244010 814.683