Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g0317 ATGGCAGAGCAAGCATACTCAGAAACGGAGTGTTGCAGTAACTCTTCATCTTCACCATCCTCATCCGGAATACAGAACCCACCAGCTAAAAGGTCCAAAACGTCGGACCCAGATCAGGAGAGACCCAAAAGAGGAAGAGATAGCAGCAAGCACCCAGTGTACAGAGGGGTCCGAATGCGGACTTGGGGCAAATGGGTGTCTGAAATTCGCGAGCCTCGCAAAAAATCTCGGATATGGCTGGGCACTTTCTCCACCCCCGAAATGGCCGCTCGTGCCCACGACGTTGCCGCCTTGAGCATCAAAGGCAACTCCGCCATTCTTAACTTCCCAGAACTCGCCTCCTCCTTGCCTCGCCCCGCCTCCTCCTCCCCACGAGACGTCCAAGCCGCCGCTGCAAAAGCTGCTTCAATGGAGCACCTCAACCCATCATCATCATCATCATCATCATCATCATCTTCATCATCATTACCATCACCATCACCATCACCATCACCATCACCATCTTCATCATCATCATCAATGGCCATAACATCGTCATCTTCCATGTCCTCCCTGATATCGACCTCAGACGCGTCGACCCCAGAGGAACTGGGCGAGATTGTGGAGCTACCAAGTCTAGGAACGAGTTTCGAAACGCCCGAGTCAGGCAACGACTTCGTTTTCGTTGACTCGGTGGATGGGTGGCTCTATCCTCCCCCGTGGTTGCACACAGCTGATGATTGTGGCTACTTTTCCGAACACTTGCCAATAACAGATACTCTGATTCCAACCAGCTTCGAAGCTTTGTTGTGGGAATATTAA 801 0.5194 MAEQAYSETECCSNSSSSPSSSGIQNPPAKRSKTSDPDQERPKRGRDSSKHPVYRGVRMRTWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALSIKGNSAILNFPELASSLPRPASSSPRDVQAAAAKAASMEHLNPSSSSSSSSSSSSSLPSPSPSPSPSPSSSSSSMAITSSSSMSSLISTSDASTPEELGEIVELPSLGTSFETPESGNDFVFVDSVDGWLYPPPWLHTADDCGYFSEHLPITDTLIPTSFEALLWEY* 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g0317 266 CDD AP2 54 112 IPR001471 GO:0003700|GO:0006355
Vvi11g0317 266 MobiDBLite consensus disorder prediction 138 157 - -
Vvi11g0317 266 ProSiteProfiles AP2/ERF domain profile. 53 110 IPR001471 GO:0003700|GO:0006355
Vvi11g0317 266 MobiDBLite consensus disorder prediction 33 54 - -
Vvi11g0317 266 SUPERFAMILY DNA-binding domain 53 111 IPR016177 GO:0003677
Vvi11g0317 266 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 32 207 - -
Vvi11g0317 266 MobiDBLite consensus disorder prediction 1 32 - -
Vvi11g0317 266 MobiDBLite consensus disorder prediction 116 176 - -
Vvi11g0317 266 Gene3D AP2/ERF domain 53 111 IPR036955 GO:0003700|GO:0006355
Vvi11g0317 266 FunFam Ethylene-responsive transcription factor 2 52 111 - -
Vvi11g0317 266 SMART rav1_2 53 116 IPR001471 GO:0003700|GO:0006355
Vvi11g0317 266 PRINTS Ethylene responsive element binding protein signature 54 65 IPR001471 GO:0003700|GO:0006355
Vvi11g0317 266 PRINTS Ethylene responsive element binding protein signature 76 92 IPR001471 GO:0003700|GO:0006355
Vvi11g0317 266 Pfam AP2 domain 52 102 IPR001471 GO:0003700|GO:0006355
Vvi11g0317 266 MobiDBLite consensus disorder prediction 1 57 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi11g0317 Vvi-Chr11 2729712 2730512 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi11g0317 39 240 AP2-EREBP Transcription Factor Family AT5G11590 61.275 7.57e-72 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vvi11g0317 AP2 9.5e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g0317 K09286 - vvi:100252531 424.091