Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g0303 ATGCCCATTGCAGAGAAACCAAGCCTTGATGGTGGGCAGAGTTTCATCACAAAGGCTAGTCCGTGTAGGACGCGCCTTTGCACTTTTGGTGCCCCTCCAACTATAAAAATCCAGACAGTTGGTCACAATGTCAAACCCCCACTCTCTCTTATAGATAAGACTCCCTCTATAAATATCTCTCTCTGTCTCTGTGTTTGTATGGCAGCCAAATCCCCAGAATCAAGCCTCATGGTGAACCGTCATATCGATCTGTGCTTTGATCTCGACCTGGCTATAACAGCAGTGGATGATACGAGTGAGATCTCAAAATCAACCTCCATGGTATCCACCATGCCGACGGTTACTGCAGTGGACGCCTGCACGGTCTGCAGGGAAGGCTTTCAATCAGGTGAGGGTGGTAAGCAACTTCCCTGTGGCCATTTCTACCATGCCGGTTGTATAGCTTCATGGCTCTCCCTCCGCAACTCCTGTCCGCTGTGCCGGTGCAGCGTCCCCGGCGAAGACTGA 507 0.5108 MPIAEKPSLDGGQSFITKASPCRTRLCTFGAPPTIKIQTVGHNVKPPLSLIDKTPSINISLCLCVCMAAKSPESSLMVNRHIDLCFDLDLAITAVDDTSEISKSTSMVSTMPTVTAVDACTVCREGFQSGEGGKQLPCGHFYHAGCIASWLSLRNSCPLCRCSVPGED* 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g0303 168 SMART ring_2 120 160 IPR001841 -
Vvi11g0303 168 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 100 162 - -
Vvi11g0303 168 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 106 168 IPR013083 -
Vvi11g0303 168 ProSiteProfiles Zinc finger RING-type profile. 120 161 IPR001841 -
Vvi11g0303 168 Pfam Ring finger domain 119 161 IPR001841 -
Vvi11g0303 168 SUPERFAMILY RING/U-box 119 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi11g0303 Vvi-Chr11 2563204 2563710 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi11g0303 81 164 C3H Transcription Factor Family AT1G68180 37.234 9.73e-16 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g0303 - K11982 vvi:100853379 343.199