Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g0302 ATGGAGCCCTTGGAAGACGATGATCTCCAGCCTCTTGGATCCGAACACGAACTGGATTCTACAGGCTCCGGCGTTTCCTCAATACTCGGCACTGAAGACGCTCGCAGCACCACTAGCTCCGGCGGTGACATATCCGTTACTAGCAGCAGCTCCGGCGAGTATCTCGCTGCCGTTGTAGCAGAGGCCGTGGTTCCGCGGATGGAGAATCCTACTCCTGCAAGCTACAGCGGCGGAAGCGGAGGGGAGACGACGGTGACGGTAGCGGCGAGAGAGAAGTGTGTGGGGAGGAACAACAAGGGAGTGACCTGGGGGTTCACTTCGGTGATTGGGAGACGGAGAGAGATGGAGGACGCCGTGGCGGTTGTCCCGGGGTTCATGTCTCGCACGTGCGATCACATCGGCGGTTGTACGGCACCAGCTTCGAGAACCTCCAGAGAGATCTCCCCCGTCCATTTCTTCGGCGTCTACGACGGCCATGGTGGCTCTCAGGTGGCTAAATTTTGTGCTGAGAGGATGCATGAAATGGTAGTGGAGGAGTGGGACCGGGAAGCAGTTGACGGATATGAATGGCGTAGGAGATGGGAAGTGGCATTTTCTAGTGGTTTTGAGAGGGCCGACAATGTGGTTATGACAGAGGAGGTGGCACCAGAAATGGTTGGTTCAACTGCTGTCGTGGTGGTTCTATCAGGTTGCCAGATTATTACATCCAATTGTGGTGACTCAAGGGCAGTGCTCTGCCGAGGGACTCAAACAATCCCCTTAACTGTTGATCAGAAGCCTGATAGAGAAGATGAACTCCGACGAATTGAAGGAGAGGGAGGGAAAGTCATAAACTGGAACGGTGCTAGGGTTTTCGGAGTTCTTGCTATGTCCAGAGCCATAGGAGATCGATATTTGCGGCCATGGATTATTCCAGTGCCTGAGATCACTTTCACAACAAGGTGTGATGAGGATGAATGTTTGATTTTGGCAAGTGATGGGCTTTGGGATGTTATGTCAAATGATGAAGTTGGAGAGGTGGCTCGCCGCCTTCTAAGACGGCGGCGAAGGTTAATGATGGCTGATGAGACTCCTGCACAATCTGTTGCTGATAATCTCACTGAAATAGCATACGGGAGAAATAGCTCAGACAACATATCTATCATTGTTGTTGATCTGAAATCAAAGAGAAGGCGTCAGCAAAGGCAATGA 1191 0.5214 MEPLEDDDLQPLGSEHELDSTGSGVSSILGTEDARSTTSSGGDISVTSSSSGEYLAAVVAEAVVPRMENPTPASYSGGSGGETTVTVAAREKCVGRNNKGVTWGFTSVIGRRREMEDAVAVVPGFMSRTCDHIGGCTAPASRTSREISPVHFFGVYDGHGGSQVAKFCAERMHEMVVEEWDREAVDGYEWRRRWEVAFSSGFERADNVVMTEEVAPEMVGSTAVVVVLSGCQIITSNCGDSRAVLCRGTQTIPLTVDQKPDREDELRRIEGEGGKVINWNGARVFGVLAMSRAIGDRYLRPWIIPVPEITFTTRCDEDECLILASDGLWDVMSNDEVGEVARRLLRRRRRLMMADETPAQSVADNLTEIAYGRNSSDNISIIVVDLKSKRRRQQRQ* 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g0302 396 FunFam Protein phosphatase 2C 51 95 394 - -
Vvi11g0302 396 CDD PP2Cc 104 386 IPR001932 -
Vvi11g0302 396 PANTHER PROTEIN PHOSPHATASE 79 386 IPR015655 GO:0004722|GO:0006470
Vvi11g0302 396 Pfam Protein phosphatase 2C 110 379 IPR001932 -
Vvi11g0302 396 Gene3D - 92 396 IPR036457 -
Vvi11g0302 396 SUPERFAMILY PP2C-like 96 387 IPR036457 -
Vvi11g0302 396 MobiDBLite consensus disorder prediction 1 48 - -
Vvi11g0302 396 ProSiteProfiles PPM-type phosphatase domain profile. 102 386 IPR001932 -
Vvi11g0302 396 SMART PP2C_SIG_2 131 386 IPR001932 -
Vvi11g0302 396 MobiDBLite consensus disorder prediction 16 48 - -
Vvi11g0302 396 SMART PP2C_4 91 384 IPR001932 -
Vvi11g0302 396 ProSitePatterns PPM-type phosphatase domain signature. 152 160 IPR000222 GO:0043169
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi11g0302 Vvi-Chr11 2549100 2561376 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi11g0302 103 395 PP2C-type Phosphatase Gene Family AT4G26080 51.923 6.29e-101 305
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g0302 K14497 - vvi:109121390 756.133