Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g0300 ATGGGTTCTCCAGAGAAGGGTGAGTTAGCGAAAAGAGGGATGGAAAGAAAGGAGAGCAAATCTATAGTGGTAATTTTCAGATATGCTGATTGGGTAGACCTTGTGCTTATGTTTCTGGGTACTGTTGGAGCTATTGGAGATGGCATGTCCACAAACTGCTTACTGGTCTTTGTTAGCCGTCTTATGAATAGCTTGGGCTATGGTAACACCCAAAAGAATCATGGGAATTTCATGGATGAGGTTGAAAAGTGCAGTTTATACTTTGTGTACTTGGCTCTAGCAGTCATGGTGGTCGCTTTTATGGAAGGGTATTGCTGGAGTCGAACAAGTGAACGCCAGGTGCTAAGGATTCGATACAAGTACTTGGAAGCTGTTCTCAGACAAGAAGTAGGGTTTTTTGATTCACAAGAAGCAACTACTTCAGAGATCATCAACAGCATATCGAAAGATACTTCTCTTATACAAGAAGTTCTTAGTGAGAAGGTTCCCACATTTCTGATGCATGCATCAGTATTCATCTCAGGACTTGCATTTGCCACTTACTTCTCATGGAGGCTGTCTTTAGTAGCCTTCCCACTGCTACTTCTACTGATTATTCCCGGCATGGTTTATGGAAAGTACTTATTGTATTTGTCCAAGAAGTGCTTCAAGGAATATGGCAAAGCAAACAGCATTGTTGAGCAGGCTCTAAGCTCCATAAAAACAGTTTACTCCTTCACTGCTGAGAGGAGAATTGTTGAAAGATATTCAGCAATATTGGATAAAACAACTAGTCTGGGAATCAAGCAAGGGATTGCCAAAGGTCTTGCTGTAGGAAGTACAGGGCTTTCCTTTGCAATATGGGCTTTCCTCTCTTGGTATGGAAGTCGGTTGGTTATGTACAAAGGCGAAAGCGGAGGGCGGATTTATGCAGCTGGCATTTCCTTCATCTTGGGTGGACTATCCCTTGGAATGGCACTCCCGGATGTGAAGTACTTCACAGAAGCTTCAGTTGCAGCAACACGAATATTTGATAGGATCGATCGAATTCCAGAAATTGACGGTGAAGATGACAAGGGGCTTGTATTAGACAAAATTCTAGGTGAACTAGAATTCGAGCATGTCAATTTCACGTACCCTTCTCGCCCCGATTCCATAGTCCTCAAAGACTTCAATCTTAAAGTCCAAGCAGGAAAAACTGTAGCTCTTGTTGGTGCAAGTGGAAGTGGTAAATCCACTGCAATTGCATTGCTGCAACGTTTTTATGATGCAGACCATGGAGTGATCCGGATTGATGGTGTGGATATAAGGACATTACAGTTGAAATGGATAAGAGGGAAAATGGGTCTTGTCAGTCAAGAACACGCACTCTTTGGGACCTCAATAAAGGAGAATATTATTTTTGGGAAGCCTAATGCCACCATGGATGAAGTCGTGGCCGCAGCCATGGCTGCAAATGCTCATAATTTCATACGGCAACTCCCAGAAGGGTATGAAACCAAGGTTGGTGAGAGAGGGGCACTTTTATCTGGAGGACAAAAGCAGCGGATCGCCATAGCCAGAGCCATTATCAAGAACCCTGTGATTCTCCTACTAGATGAAGCCACTAGTGCTCTTGATTCTGAATCTGAAACACTGGTCCAAAATGCACTTGATCAAGCTTCCATGGGAAGAACCACACTGGTAGTTGCCCACAAGCTTGCCACAGTAAGAAATGCAGATCTCATAGCAGTCATGAATGGTGGTTGCGTCATTGAAATAGGTTCACATCATGATCTTATCAACAAGAAAAATGGTCACTATGCAAAACTTGCAAAAATGCAGAGACAATTCAGCTGTGATGACCAAGAACAGAATTCCGAAACATGGATTTCTTCGGTTGCAAGAAGCAGTGCCGGCAGGCCAAGCACAGCCACATCAAGTCCAGCACTCTTTGCTTCACCATTACCTGATGACAATCCAAAACCAGCCATATCTCACCACCCTCCTTCCTTCTCCCGTCTTCTCTCTTTAAACTCTCCTGAATGGAAGCAAGGTTTGATTGGAAGCCTCTCAGCTATAGCCTTTGGGGCAGTGCAACCTGTCTATGCCTTAACCATAGGTGGAATGATTTCAGCTTTCTTCTTACCAAGTCATGCTGAAATTCGTGCCCGAGTTGAAACATATTCTCTTATTTTCTCCTCACTTACCTTGATTTCCATCATTTTGAATCTGATACAACATTATAATTTTGCTTATATGGGTGCTCATCTAACAAAGAGAATCCGATTGAGTATGCTCAACAAAATCTTGACCTTTGAGGCCGCTTGGTTTGATGAAGAACAGAACTCGAGCGGGGTCTTATGCTCCAGACTGAGTAATGAAGCATCCATTGTTAAATCCCTTGTTGCTGATAGAGTCTCTCTTTTGGTTCAAACCACTTCGTCTGTAACCATTGCAATGGTGCTGGGGCTGGCTGTGGCTTGGAAGCTTGCGCTTGTTATGATAGCTGTCCAACCTCTCACAATTCTATGCTTTTATACCAGGAAAGTTCTGCTTTCTAATATTTCAAATAATGTAGTTGAAGCACAGAACCAAAGCACACAAATTGCGGTAGAAGCCGTCTATAATCATAGAATTGTGACTTCATTTGGAAGTGTGGGAAAGGTCCTTCAGCTTTTTGATGAGGCCCAGGAGGAGCCGAGGAAGGAAGCAATGAAGAAATCATGGCTAGCAGGAATTGGCATGGGGTCTGCACTCTGCCTAACTTTTATGTCTTGGGCTCTGGACTTTTGGTATGGAGGAAAACTTGTGGAATCTGGGCAGATATCTGCTGGGGATGTGTTCAAGACATTTTTCGTGTTGGTAAGTACTGGCAAGGTCATCGCTGATGCTGGGAGCATGACTTCTGATCTAGCAAAGGGCTCAACAGCTGTTGCATCAGTATTCGAGATTCTTGATCGGCAATCATTAATTCCAGGGTCTTACAATGCGGGGGACAACATGGCCGGAACCAAGTTAGAGAAGATGTCTGGTGGGATAGAGATAAAGAAGGTTGATTTTGCATACCCAAGCCGGAAGGAGAGCCTAGTGCTGCGCCAATTTTGCTTGGAAGTGAAACCAGGCACAAGCATCGGACTCGTCGGGAAAAGCGGGTGTGGGAAATCAACCGTGATTGGATTGATTCAGAGATTTTATGATGCTGATAAGGGGACAGTGAAGGTGGACGGAGTTGACATAAGGGAACTTGATCTTGGATGGTATAGAATGCACATGGCCCTGGTTAGCCAAGAACCTGTAATATATTCAGGCAGCATTCGTGACAACATTCTGTTTGGAAAGCTTGATGCATCAGAGAATGAGGTGGTGGAGGCTGCCAGAGCTGCCAACGCTCACGAATTTATCTCGTCACTAAAAGATGGATACGAGACTGAATGCGGGGAGAGAGGGGTACAGTTATCAGGGGGGCAGAAGCAGAGAATAACGATTGCAAGGGCGATAATCCGAAACCCGATAGTACTATTACTAGATGAGGCAACAAGTGCTCTGGATGTACAATCAGAGCAAGTTGTGCAGGAGGCATTGGACAGAATCATGGTTGGAAGAACTACAATTGTGGTGGCACACAGGCTCAACACAATAAAGAAGTTGGACTCAATTGCTTTTGTCTCAGAAGGGAAGGTGGTGGAACGTGGAACCTATGCTCAACTAAAAAGCAAACGAGGTGCCTTCTTCAATCTTGCCAGCCTTCAGAAGTAG 3717 0.4431 MGSPEKGELAKRGMERKESKSIVVIFRYADWVDLVLMFLGTVGAIGDGMSTNCLLVFVSRLMNSLGYGNTQKNHGNFMDEVEKCSLYFVYLALAVMVVAFMEGYCWSRTSERQVLRIRYKYLEAVLRQEVGFFDSQEATTSEIINSISKDTSLIQEVLSEKVPTFLMHASVFISGLAFATYFSWRLSLVAFPLLLLLIIPGMVYGKYLLYLSKKCFKEYGKANSIVEQALSSIKTVYSFTAERRIVERYSAILDKTTSLGIKQGIAKGLAVGSTGLSFAIWAFLSWYGSRLVMYKGESGGRIYAAGISFILGGLSLGMALPDVKYFTEASVAATRIFDRIDRIPEIDGEDDKGLVLDKILGELEFEHVNFTYPSRPDSIVLKDFNLKVQAGKTVALVGASGSGKSTAIALLQRFYDADHGVIRIDGVDIRTLQLKWIRGKMGLVSQEHALFGTSIKENIIFGKPNATMDEVVAAAMAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETLVQNALDQASMGRTTLVVAHKLATVRNADLIAVMNGGCVIEIGSHHDLINKKNGHYAKLAKMQRQFSCDDQEQNSETWISSVARSSAGRPSTATSSPALFASPLPDDNPKPAISHHPPSFSRLLSLNSPEWKQGLIGSLSAIAFGAVQPVYALTIGGMISAFFLPSHAEIRARVETYSLIFSSLTLISIILNLIQHYNFAYMGAHLTKRIRLSMLNKILTFEAAWFDEEQNSSGVLCSRLSNEASIVKSLVADRVSLLVQTTSSVTIAMVLGLAVAWKLALVMIAVQPLTILCFYTRKVLLSNISNNVVEAQNQSTQIAVEAVYNHRIVTSFGSVGKVLQLFDEAQEEPRKEAMKKSWLAGIGMGSALCLTFMSWALDFWYGGKLVESGQISAGDVFKTFFVLVSTGKVIADAGSMTSDLAKGSTAVASVFEILDRQSLIPGSYNAGDNMAGTKLEKMSGGIEIKKVDFAYPSRKESLVLRQFCLEVKPGTSIGLVGKSGCGKSTVIGLIQRFYDADKGTVKVDGVDIRELDLGWYRMHMALVSQEPVIYSGSIRDNILFGKLDASENEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQKQRITIARAIIRNPIVLLLDEATSALDVQSEQVVQEALDRIMVGRTTIVVAHRLNTIKKLDSIAFVSEGKVVERGTYAQLKSKRGAFFNLASLQK* 1239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g0300 1238 CDD ABC_MTABC3_MDL1_MDL2 364 601 - -
Vvi11g0300 1238 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1000 1236 IPR003439 GO:0005524
Vvi11g0300 1238 Gene3D - 353 602 IPR027417 -
Vvi11g0300 1238 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 363 599 IPR003439 GO:0005524
Vvi11g0300 1238 FunFam ABC transporter B family member 4 353 610 - -
Vvi11g0300 1238 Gene3D ABC transporter type 1, transmembrane domain 25 900 IPR036640 GO:0005524|GO:0016020
Vvi11g0300 1238 SUPERFAMILY ABC transporter transmembrane region 25 347 IPR036640 GO:0005524|GO:0016020
Vvi11g0300 1238 CDD ABC_MTABC3_MDL1_MDL2 1000 1237 - -
Vvi11g0300 1238 CDD ABC_6TM_Pgp_ABCB1_D1_like 37 336 - -
Vvi11g0300 1238 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 353 601 IPR027417 -
Vvi11g0300 1238 SMART AAA_5 390 576 IPR003593 GO:0016887
Vvi11g0300 1238 SMART AAA_5 1027 1219 IPR003593 GO:0016887
Vvi11g0300 1238 Pfam ABC transporter transmembrane region 38 301 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vvi11g0300 1238 Pfam ABC transporter transmembrane region 674 943 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vvi11g0300 1238 SUPERFAMILY ABC transporter transmembrane region 660 973 IPR036640 GO:0005524|GO:0016020
Vvi11g0300 1238 MobiDBLite consensus disorder prediction 620 639 - -
Vvi11g0300 1238 PANTHER ABC TRANSPORTER B FAMILY 11 719 IPR039421 -
Vvi11g0300 1238 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 38 328 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vvi11g0300 1238 FunFam ABC multidrug transporter SitT 990 1238 - -
Vvi11g0300 1238 ProSitePatterns ABC transporters family signature. 502 516 IPR017871 GO:0005524|GO:0016887
Vvi11g0300 1238 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 993 1237 IPR027417 -
Vvi11g0300 1238 ProSitePatterns ABC transporters family signature. 1139 1153 IPR017871 GO:0005524|GO:0016887
Vvi11g0300 1238 CDD ABC_6TM_Pgp_ABCB1_D2_like 662 978 - -
Vvi11g0300 1238 FunFam Putative ABC transporter B family member 8 642 982 - -
Vvi11g0300 1238 Gene3D - 990 1238 IPR027417 -
Vvi11g0300 1238 Pfam ABC transporter 1020 1167 IPR003439 GO:0005524
Vvi11g0300 1238 FunFam ABC transporter B family member 1 24 359 - -
Vvi11g0300 1238 Pfam ABC transporter 381 530 IPR003439 GO:0005524
Vvi11g0300 1238 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 673 960 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi11g0300 Vvi-Chr11 2530757 2536294 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi11g0300 4 1238 Calmodulin-binding Proteins AT2G36910 42.047 0.0 962
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g0300 K05658 - vvi:100249029 2331.21