Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g0292 ATGTCGAAAACACCCCCACCTTCTGTCCAAATTCACTTCTACACCCTCTCTATCCTCCTCTTCTCTTTAACCTTTTATGGGAATTCTCAGGCCAGTGATCAGGAGCTCTCAATCCTACTGAAGCTTAAGCAACACTGGCATAATCCGCCAGCCATCGATCACTGGACTTCGTCCAATTCATCCTACTGCACATGGCCGGAGATTGAATGTGCAGAGGATGGCTCTGTCACTGGAATCTCTCTTGTGAACATCAACATCACCAACGAAATCCCACCCTTCATCTGTGACCTGAAGAACATCACAACCATTGATCTCCAACTCAACTACATCCCTGGTGGATTCCCTACAGGTCTGTACAACTGCACCAAGCTTGAGTACTTGGACCTCTCTCAAAACTACTTCGTTGGCCCCATTCCGGCGGATGTTGACCGCTTGTCACCTCGGCTGTATCTCCTCTTCCTCGTCGGCAACAACTTCTCTGGCGATATTCCGGCTGCAATTGGGCGATTACCGGAGTTGAGGTTTCTTAGGCTCACCCAAAATCAGTTCAACGGTTCTTTCCCGCCAGAAATAGGTAATTTGTCGAAACTTGAACACTTAGGAATGGCCTATAACGATTTCCGGCCATCGGAAATACCTCTGAATTTCACTAAGTTGAAGAATTTGAAGTATCTGTGGATGGCCCAATCAAATTTGATAGGAGAAATCCCGGAAATGATTGGAGAAATGACTGCACTCCAGTACTTGGACTTGTCTTCAAACAATTTGAGTGGGAAAATCCCAAGCAGTTTGTTTCTGTTGAAAAATTTGACCGAATTATACCTTCAAGTAAATCAATTTTCTGGGGAGATTGGCCCAACAATTGAGGCCATAAATTTGCTTAGAATTGATCTTTCTAAGAACAACTTATCTGGGACAATCCCAGAAGATTTTGGAAGGCTAAGCAAATTGGAAGTTCTGGTTTTGTACTCCAATCAATTCACAGGGGAGATTCCAGAAAGCATTGGCAATCTAACAGCCCTGAGAGACGTTAGGTTGTTCAGCAACAATCTGTCCGGTATACTGCCTCCAGACTTCGGGCGATACTCAATGCTGGAAGCGTTTGAGGTAGCTTCCAACAGTTTTACCGGAAGGCTTCCAGAGAACTTGTGCGCAGGTGGAAAATTGGAAGGATTGGTAGCCTTTGATAATAAGCTCAGTGGGGAATTGCCTGAATCCCTTGGGAATTGCAGGAATTTGAAAACTGTCATGGTTTACAATAACTCGCTTTCAGGCAACGTTCCCAGTGGTCTATGGACTTTAGTGAACATATCACGGCTGATGCTAAGCCACAATTCATTTACAGGTGAGCTGCCTGATGAATTGGGGTGGAATCTTTCTCGGCTTGAGATCAGAGACAACATGTTTTATGGAAATATTCCAGCTGGAGTAGCTTCCTGGAAGAACCTGGTGGTGTTTGATGCACGCAATAACCAATTATCCGGTCCAATTCCTTCTGAATTAACAGCCCTACCTAGCCTCACTACTCTTTTTCTCGACAGAAACCTATTTGACGGTCACCTTCCATCCAAGATAGTGTCTTGGAAGTCGCTGAATTTCCTGAACCTTAGCCGAAATCAGATCTCTGGCATGATCCCGGCTGAAATTGGTTATCTACCTGACCTTTCAGAGCTAGACCTGTCGGAGAACCAACTCTCCGGTGAAATCCCACCTGAAATCGGCCTCCTGACTTTCACCTTTCTCAACCTTTCTTCCAATCATCTTACTGGGAAAATCCCAACCAAGTTTGAAAACAAAGCATATGACAGCAGCTTCTTGAACAACCCTGGTCTCTGTACAAGTAACCCATTCCTAGGCACTGGCTTCCAACTCTGCCATTCTGAGACAAGGAAGAAGAGCAAGATCTCATCAGAATCTTTGGCTTTGATTCTGATTGTTGCTGCAGCAGCCGCTGTGTTGGCCTTGTCATTTTCATTCATTGTCTTCAGAGTCTATAGAAGGAAGACGCACAGATTTGATCCCACATGGAAACTCACCTCATTCCAGAGATTGAATTTCACTGAAGCAAACATTTTGTCAAGTTTAGCAGAGAATAATGTGATTGGAAGTGGCGGGTCAGGGAAAGTATACTGTGTTCCTGTAAATCATTTGGGTGAAGTTGTGGCTGTGAAGAGGATTTGGACTCACAGAAACTTGGATCACAAGCTTGAGAAAGAATTTTTAGCAGAAGTTGAAATACTGGGTGCAATTCGGCACTCCAATATCATAAAATTGCTGTGTTGTGTTTCAAGTGAGGATTCAAAACTTCTGGTCTATGAGTATATGGAAAGGAGAAGCCTGGATCGGTGGCTCCATAGGAAGAGAAGGCCGATGATTGCCTCGGGTTTAGTCCATCATTTTGTCTTGGCCTGGCCCCAGAGGTTGAAGATTGCTGTGGATATTGCCCAGGGTCTATGCTACATGCACCATGACTGTTCACCTCCCATTGTTCATCGAGATGTGAAGTCGAGCAATATCCTGCTGGATTCTGAGTTCAATGCAAAATTAGCAGATTTTGGATTGGCAAAGATGCTGATCAAGCCCGGAGAGCTGAACACAATGTCAACTGTGGCAGGCTCAGTCGGGTACATGGCACCAGAGTCTGCTCATACTGCAAGAGTGAGTGAGAAGACTGATGTTTACAGCTTCGGGGTAATCCTTCTGGAGCTGGTAACAGGACGGGAAGCCAGTGATGGAGATGAGCACACATGCCTTGTTGAGTGGGCATGGCAGCACATCCAAGAAGGCAAGCATACAGCCGACGCCTTGGACAAGGAGATCAAGGAACCCTGCTACTTGGATGAGATGAGCAGTGTGTTCAAGCTAGGGATCATTTGTACTGGCACACTGCCTTCTACCAGGCCCAGCATGAGGAAGGTTTTGAAGATCTTGCTCCAATACAGCAATCCACTAGAGGTCTATGGAGGGGAGAATACCGGAAGAGAATACGATGCCGCCCCCCTCCTCGACACAAAGCCAGCGAGAATATCAGAAAATAATGGCAGTAATTTTGCGTCCAATGTGTGA 3066 0.4563 MSKTPPPSVQIHFYTLSILLFSLTFYGNSQASDQELSILLKLKQHWHNPPAIDHWTSSNSSYCTWPEIECAEDGSVTGISLVNINITNEIPPFICDLKNITTIDLQLNYIPGGFPTGLYNCTKLEYLDLSQNYFVGPIPADVDRLSPRLYLLFLVGNNFSGDIPAAIGRLPELRFLRLTQNQFNGSFPPEIGNLSKLEHLGMAYNDFRPSEIPLNFTKLKNLKYLWMAQSNLIGEIPEMIGEMTALQYLDLSSNNLSGKIPSSLFLLKNLTELYLQVNQFSGEIGPTIEAINLLRIDLSKNNLSGTIPEDFGRLSKLEVLVLYSNQFTGEIPESIGNLTALRDVRLFSNNLSGILPPDFGRYSMLEAFEVASNSFTGRLPENLCAGGKLEGLVAFDNKLSGELPESLGNCRNLKTVMVYNNSLSGNVPSGLWTLVNISRLMLSHNSFTGELPDELGWNLSRLEIRDNMFYGNIPAGVASWKNLVVFDARNNQLSGPIPSELTALPSLTTLFLDRNLFDGHLPSKIVSWKSLNFLNLSRNQISGMIPAEIGYLPDLSELDLSENQLSGEIPPEIGLLTFTFLNLSSNHLTGKIPTKFENKAYDSSFLNNPGLCTSNPFLGTGFQLCHSETRKKSKISSESLALILIVAAAAAVLALSFSFIVFRVYRRKTHRFDPTWKLTSFQRLNFTEANILSSLAENNVIGSGGSGKVYCVPVNHLGEVVAVKRIWTHRNLDHKLEKEFLAEVEILGAIRHSNIIKLLCCVSSEDSKLLVYEYMERRSLDRWLHRKRRPMIASGLVHHFVLAWPQRLKIAVDIAQGLCYMHHDCSPPIVHRDVKSSNILLDSEFNAKLADFGLAKMLIKPGELNTMSTVAGSVGYMAPESAHTARVSEKTDVYSFGVILLELVTGREASDGDEHTCLVEWAWQHIQEGKHTADALDKEIKEPCYLDEMSSVFKLGIICTGTLPSTRPSMRKVLKILLQYSNPLEVYGGENTGREYDAAPLLDTKPARISENNGSNFASNV* 1022
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g0292 1021 SUPERFAMILY RNI-like 292 593 - -
Vvi11g0292 1021 ProSitePatterns Protein kinases ATP-binding region signature. 701 724 IPR017441 GO:0005524
Vvi11g0292 1021 ProSitePatterns Serine/Threonine protein kinases active-site signature. 829 841 IPR008271 GO:0004672|GO:0006468
Vvi11g0292 1021 SUPERFAMILY L domain-like 46 354 - -
Vvi11g0292 1021 Pfam Leucine rich repeat N-terminal domain 33 70 IPR013210 -
Vvi11g0292 1021 PRINTS Leucine-rich repeat signature 552 565 - -
Vvi11g0292 1021 PRINTS Leucine-rich repeat signature 246 259 - -
Vvi11g0292 1021 FunFam Leucine-rich receptor-like protein kinase family protein 384 627 - -
Vvi11g0292 1021 FunFam Receptor-like protein kinase HSL1 675 774 - -
Vvi11g0292 1021 Gene3D Phosphorylase Kinase; domain 1 678 774 - -
Vvi11g0292 1021 Gene3D Transferase(Phosphotransferase) domain 1 775 987 - -
Vvi11g0292 1021 Gene3D Ribonuclease Inhibitor 32 187 IPR032675 -
Vvi11g0292 1021 SMART serkin_6 695 981 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi11g0292 1021 FunFam Receptor-like protein kinase HSL1 isoform A 32 185 - -
Vvi11g0292 1021 ProSiteProfiles Leucine-rich repeat profile. 554 576 IPR001611 GO:0005515
Vvi11g0292 1021 PANTHER OS04G0122200 PROTEIN 77 208 - -
Vvi11g0292 1021 FunFam Putative leucine-rich repeat receptor-like protein kinase family protein 190 287 - -
Vvi11g0292 1021 SMART LRR_typ_2 504 528 IPR003591 -
Vvi11g0292 1021 SMART LRR_typ_2 434 458 IPR003591 -
Vvi11g0292 1021 SMART LRR_typ_2 552 576 IPR003591 -
Vvi11g0292 1021 SMART LRR_typ_2 243 267 IPR003591 -
Vvi11g0292 1021 SMART LRR_typ_2 170 194 IPR003591 -
Vvi11g0292 1021 SMART LRR_typ_2 314 338 IPR003591 -
Vvi11g0292 1021 ProSiteProfiles Leucine-rich repeat profile. 245 267 IPR001611 GO:0005515
Vvi11g0292 1021 Gene3D Ribonuclease Inhibitor 385 633 IPR032675 -
Vvi11g0292 1021 Gene3D Ribonuclease Inhibitor 188 289 IPR032675 -
Vvi11g0292 1021 FunFam Kinase family with leucine-rich repeat domain-containing protein 775 992 - -
Vvi11g0292 1021 Pfam Leucine rich repeat 292 351 IPR001611 GO:0005515
Vvi11g0292 1021 Gene3D Ribonuclease Inhibitor 290 384 IPR032675 -
Vvi11g0292 1021 CDD STKc_IRAK 701 977 - -
Vvi11g0292 1021 Pfam Leucine Rich Repeat 246 264 IPR001611 GO:0005515
Vvi11g0292 1021 SUPERFAMILY Protein kinase-like (PK-like) 688 979 IPR011009 -
Vvi11g0292 1021 Pfam Protein kinase domain 697 975 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi11g0292 1021 ProSiteProfiles Protein kinase domain profile. 695 985 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi11g0292 1021 FunFam Leucine-rich repeat receptor-like protein kinase PXL1 288 383 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi11g0292 Vvi-Chr11 2478293 2481470 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi11g0292 29 1008 Receptor kinase-like Gene Family AT5G25930 55.081 0.0 1045
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vvi11g0292 Pkinase 1.3e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g0292 - K00924 vvi:100247568 2016.89