LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi11g0287	ATGGGAAGGGCAACAAGGTGGTTCAAGGGCTTGTTTGGGTTGAAGAGAGACAAGGAACACAAGGACAATTCAAATCCCGGCGACCGGAAGGACAAGAGTAGGTGGAGTTCTGGCCATTCCGGGAGGGACTCCGTTGGGTTGTGTCACAATCCAACCACTATTCCGCCGAACATATCGGCGGCGGAGGCAGCTTGGCTAAGATCTTACTACACCGACACTGAGAACGAGCAGAACAAGCATGCAATTGCAGTGGCTGCTGCCACGGCGGCGGCCGCCGACGCTGCCGTGGCTGCCGCTCAAGCGGCGGTGGCCGTCGTCCGACTCACCAGCCACGGCAGAGGCACCATGTTCGGTGGTGGCCGTGAGAGGTGGGGTGCTGTGAAGATTCAGACTGTTTTTCGAGGATACTTGGCGAGGAAAGCCCTGAGAGCTCTGAAAGGACTGGTGAAGTTACAAGCGCTGGTCAGAGGCTATTTGGTGAGGAAGCAAGCCACAGCCACACTTCACGGTATGCAGGCTCTGATAAGAGCCCAGGCCACAGTTCGAGCCCAGAAAGCTCGAGAGCTGATCAGCAATGAGAAAAGATTCGAAATCCAAACTAGAAAATCTATGGAAAGGTTTGATGAGAGTAGGAGTGAGCACACAGCATCAATCCACAGCAGAAGGCTTTCAGCATCTCTCGACACTACTTTCAACGCCATTGATGGAAGCCCAAAGATTGTGGAAGTTGATACTGGGAGGCCTAAGTCCAGATCCCGGAGAACCAACACATCGGTTTCAGATTCAGGCGATGACCAGCATTACCAAACACTCTCCTCCCCCCTCCCATGTCGAACTCCAATTCCAGTTCCAGTCCGTTTATCAACACCCGATCACCGCAATTATCAAGACTCCGACTGGGGTTTAACGGGTGACGAATGCAGGTTCTCTACTGCCCAAAGCACCCCTAGGTTTATGAATTCAGAAAGGTCCAATGTGCCGATTACACCGGCCAAGACCGTATGCGCTGACAGCTTCTTCCGGCAGTACACAAATTTCCCAAATTACATGGCCAATACACAATCGTTTAAGGCTAAATTAAGGTCTCACAGTGCTCCAAAACAACGGCCGGAGCCAGGGCCTAAGAAGAGGCTTTCACTCAATGAAATGATGGAGTCAAGGAGCAGCCTAAGTGGGGTTAAGATGCAGAGATCATGCTCAAGAGTTCAAGAAGCCATTAATTTTAAAAATGCTGTGATGGGGAAGCTTGAGAGACCCTCAGAGATTGTTAGAGAGGCAGAGAGATGCAACTTGCAGAGGAGATGGTAA	1308	0.5145	MGRATRWFKGLFGLKRDKEHKDNSNPGDRKDKSRWSSGHSGRDSVGLCHNPTTIPPNISAAEAAWLRSYYTDTENEQNKHAIAVAAATAAAADAAVAAAQAAVAVVRLTSHGRGTMFGGGRERWGAVKIQTVFRGYLARKALRALKGLVKLQALVRGYLVRKQATATLHGMQALIRAQATVRAQKARELISNEKRFEIQTRKSMERFDESRSEHTASIHSRRLSASLDTTFNAIDGSPKIVEVDTGRPKSRSRRTNTSVSDSGDDQHYQTLSSPLPCRTPIPVPVRLSTPDHRNYQDSDWGLTGDECRFSTAQSTPRFMNSERSNVPITPAKTVCADSFFRQYTNFPNYMANTQSFKAKLRSHSAPKQRPEPGPKKRLSLNEMMESRSSLSGVKMQRSCSRVQEAINFKNAVMGKLERPSEIVREAERCNLQRRW*	436

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vvi11g0287	435	Pfam	Protein of unknown function (DUF4005)	316	392	IPR025064	-
	Vvi11g0287	435	SMART	iq_5	144	165	IPR000048	GO:0005515
	Vvi11g0287	435	SMART	iq_5	121	143	IPR000048	GO:0005515
	Vvi11g0287	435	MobiDBLite	consensus disorder prediction	17	38	-	-
	Vvi11g0287	435	Pfam	IQ calmodulin-binding motif	149	163	IPR000048	GO:0005515
	Vvi11g0287	435	Pfam	IQ calmodulin-binding motif	124	143	IPR000048	GO:0005515
	Vvi11g0287	435	MobiDBLite	consensus disorder prediction	238	290	-	-
	Vvi11g0287	435	PANTHER	IQ-DOMAIN 5-RELATED	1	382	-	-
	Vvi11g0287	435	MobiDBLite	consensus disorder prediction	252	276	-	-
	Vvi11g0287	435	MobiDBLite	consensus disorder prediction	358	377	-	-
	Vvi11g0287	435	ProSiteProfiles	IQ motif profile.	146	173	IPR000048	GO:0005515
	Vvi11g0287	435	ProSiteProfiles	IQ motif profile.	122	150	IPR000048	GO:0005515
	Vvi11g0287	435	MobiDBLite	consensus disorder prediction	17	51	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vvi11g0287	Vvi-Chr11	2439325	2441040	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vvi11g0287	1	395	IQD Protein Family	AT3G16490	53.676	1.50e-105	316

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vvi11g0287	-		-	vvi:100245766	827.009