Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g0286 ATGTCAAAGTTTCAATGCGTTTCCTGTGTTGCTATTCTTCTTTTTCTTCTCAATTCAACCCCAACACACTGCCACACCAAAGGAATAAGACCCAAGAACTCCGCCGGGAAGAGGCTGTCGACCAATATGACACAGACCCAATTCGCAGAACAGCAATTCATGAAGTGGGTAAGGTTTGTTGGGAGCCTCAGGCACTCTATGTTTAAGGCAGCCAAGAATAAGCTCTTCCCCTCTTACGCAATCACTGTGAATAAGAATTCCGCGGCCGGAGACTTTAGGTCTATTCAGGATGCTATTGATTCTCTGCCTTCCATCAATCTAGTGAGAGTTGTTATCAAGGTCCATGCGGGAGTTTACACGGAGAAGGTTAATATCCCCGCATTCAAATCCTTCATAACCATAGAAGGAGCAGGAGCAGATAAAACAGTTGTTCAATGGGGAGATACTGCTCGGACAATTGGGGAAAAAGGACAGCCTATTGGCACCTTCAATTCTGCAACTTTTGCTGTGAATTCCCTTTATTTCATTGCCAAGAACATCACATTCAAGAACACTACACCAGTTCCAGCTCCGGGAGCTGTAGGAAAGCAAGCGGTGGCATTTAGAATATCAGGAGACACAGCAGCTTTCTTGGGGTGTAAATTCTTGGGAGCTCAGGACACACTATATGACCATCTGGGTAGGCATTATTACAAAGATTGCTACATTGAAGGCTCTGTGGATTTCATCTTTGGAAACGCCCTCTCCCTATTTGAGGGATGTCACGTGCATGCCATAGCACAAAATACAGGGGCCCTTACAGCACAAGGCCGGAGTAGTCTCCTAGAAGACACGGGATTCTCATTTGTGAACTGTAAGGTCACGGGCTCAGGAGCTCTGTTCCTTGGGAGGGCATGGGGTCCCTTCTCCAGGGTGGTCTTTGCCTACACTTATATGGACGATATTATCATTCCCAAAGGCTGGTATAACTGGGGTGACCCCAGCCGGGAAATGACTGTGTTTTATGGGCAATACAAATGCACAGGGCCAGGAGCAGCCTTTGCAGGAAGAGTGTCATGGTCAAGAGAGCTCACTGATCAGGAAGCCAAGCCTTTTATTTCACTTAGCTACATTGATGGGTCTGAATGGATCAAAATGTAA 1140 0.4649 MSKFQCVSCVAILLFLLNSTPTHCHTKGIRPKNSAGKRLSTNMTQTQFAEQQFMKWVRFVGSLRHSMFKAAKNKLFPSYAITVNKNSAAGDFRSIQDAIDSLPSINLVRVVIKVHAGVYTEKVNIPAFKSFITIEGAGADKTVVQWGDTARTIGEKGQPIGTFNSATFAVNSLYFIAKNITFKNTTPVPAPGAVGKQAVAFRISGDTAAFLGCKFLGAQDTLYDHLGRHYYKDCYIEGSVDFIFGNALSLFEGCHVHAIAQNTGALTAQGRSSLLEDTGFSFVNCKVTGSGALFLGRAWGPFSRVVFAYTYMDDIIIPKGWYNWGDPSREMTVFYGQYKCTGPGAAFAGRVSWSRELTDQEAKPFISLSYIDGSEWIKM* 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g0286 379 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 77 378 - -
Vvi11g0286 379 FunFam Pectinesterase 77 379 - -
Vvi11g0286 379 Pfam Pectinesterase 83 373 IPR000070 GO:0030599|GO:0042545
Vvi11g0286 379 SUPERFAMILY Pectin lyase-like 77 378 IPR011050 -
Vvi11g0286 379 Gene3D - 77 379 IPR012334 -
Vvi11g0286 379 ProSitePatterns Pectinesterase signature 2. 236 245 IPR033131 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi11g0286 Vvi-Chr11 2434624 2437584 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi11g0286 81 377 Carbohydrate Esterase AT5G47500 51.342 9.62e-107 316
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g0286 K01051 - vvi:104880639 776.548