Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g0280 ATGAATATACAAGAGAATTTCCGCAAACAAATTGTGCAGGAGCTGAAGATAAATCAAGCATCACAATGTTCACATATTGTTGTTTGCTACCATTCGTTCTATCACAATGGAGTCATCTCTCTTGTCCTGGAATACATGGATCGTGGATCTTTGGTTGATGTGATCAGACAGGTCAAAACAATCCTTGAACCATATCTTGCTGTTCTTTGTAAGCAGGTTTTACAAGGTCTTGTGTACTTGCACCATGAAAGACACGTAATTCATAGGGACATAAAACCATCCAACCTGCTGGTAAACCACAAAGGGGAAGTAAAGATTACAGATTTTGGTGTGAGTGCTATGCTAGGTAGCTCTATGGGTCAGAGGGACACGTTTGTTGGGACTTACAATTACATGTCGCCTGAGAGAATTAAAGGAAGCACTTATGACTACAGCAGTGATATTTGGAGTCTGGGCATGGTAGCACTTGAATGTGCTATTGGACATTTTCCTTATATGCAATCTGAAGACCAGCAAAGCGGGCCAAGCTTTTATGAGCTCTTAGAGGCAATTGTGGAAAGCCCACCACCATCTGCTCCCCCAGATCAATTCTCTCCAGAATTTTGTTCTTTTATATCTGCCTGCATACAGAAGAACCCTCAAGACCGATTGTCATCATTAGACCTCGTGAGTCACCCTTTCATCAAAAAGTTTGAAGACAAGGACATTGATCTCGAAATTCTGGTAGGCAGCTTGGAACCTCCTGTAAATTTCCCAAGATAG 762 0.4173 MNIQENFRKQIVQELKINQASQCSHIVVCYHSFYHNGVISLVLEYMDRGSLVDVIRQVKTILEPYLAVLCKQVLQGLVYLHHERHVIHRDIKPSNLLVNHKGEVKITDFGVSAMLGSSMGQRDTFVGTYNYMSPERIKGSTYDYSSDIWSLGMVALECAIGHFPYMQSEDQQSGPSFYELLEAIVESPPPSAPPDQFSPEFCSFISACIQKNPQDRLSSLDLVSHPFIKKFEDKDIDLEILVGSLEPPVNFPR* 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g0280 253 Gene3D Transferase(Phosphotransferase) domain 1 49 245 - -
Vvi11g0280 253 SMART serkin_6 1 228 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi11g0280 253 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 2 230 - -
Vvi11g0280 253 CDD PKc_MAPKK_plant_like 1 232 - -
Vvi11g0280 253 Gene3D Phosphorylase Kinase; domain 1 1 47 - -
Vvi11g0280 253 FunFam Mitogen-activated protein kinase kinase 6 49 247 - -
Vvi11g0280 253 Pfam Protein kinase domain 4 228 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi11g0280 253 ProSiteProfiles Protein kinase domain profile. 1 228 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi11g0280 253 SUPERFAMILY Protein kinase-like (PK-like) 4 245 IPR011009 -
Vvi11g0280 253 ProSitePatterns Serine/Threonine protein kinases active-site signature. 86 98 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi11g0280 Vvi-Chr11 2379793 2381288 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi11g0280 1 253 MAP Kinase Kinase Gene Family AT5G56580 85.827 8.56e-164 456
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE7 Vvi11g0280 Pkinase 1e-57 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g0280 K04368 - vvi:100252603 509.99