Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g0273 ATGGAGAAGAGTTGGGTTCTGGCTTTTCTCCTCCTCCAAGTACTTCCAACAGAAGGTGATTTTGGGGTGGGTGCCGGAATTGGTGTTGGAATTGGCAATGGTGATGGTGGGGGTGGTGGTGGGGGTGCATCTGTGTGGATTGGTGGTGGGATTGACGGCCAAAACCCACCTGGGTATACAGCTTCAAGCCTCAGCAGTGCGTACACAGCTCTCCAGGCATGGAAATCTGCTATTACAGATGACCCATTGAAGGTTTTGCGCACTTGGGTTGGCTCCAATGTGTGTGCTTACAGAGGAGTCTTCTGTGCAGATCCTGAAGAAGATGGGTCTGGACAAACCGGCCCTGTTGTTGCAGGAATAGATCTCAACCGTGCAAATCTTCAGGGCACTCTTGTGAAGGAACTTTCTGTCCTTACGGACATGTCTCTCCTCCACCTCAGCGGCAACAGATTCACAGGCACAGTTCCTGAAAGTTTCAGATATCTCCTCTCTCTCAAAGAGTTGGACCTAAGTAACAACCACTTCTCGGGTCCTTTCCCTACAGTGACTCTTCTCATGCCTAATCTCATATATCTGGACATCAGATTCAACAACTTTGCAGGGCCCATTCCTGATGATCTCTTCAACAAGGAGCTTGACGCCATCATAATCAACAATAACCAGTTTGATGGCGAACTTCCTCCAAATTTGGGGAACTCACCAGCTTCTGTGATAAATTTGGCTAACAACAAGTTCAGTGGGAACATCCCAACTAGCTTTGCGTACATGAATCCTAAATTGAAGGAGATTTTGTTCCTCAACAACCAATTAACAGGGTGCATTCCTGAGGGAGTTGGGATGTGGGATGGAATGGAAGTTTTGGATTTGAGCCACAACTCACTGATGGGCCATTTGCCAAATTCAATTTCTTGTCTTGAGGAGATTGAAGTTCTTAATTTGGCACACAACAAGCTGTCTGGGTCACTCTCAGACCTGGTCTGTTCACTGAGAAGCATTGTGAATCTGACTGTGGCTTACAATTTCTTTTCTGGGTTTGGGCAAGAATGCTCCAAGCTGTTCTTCAGGAATGTGGGTTTTGATTTCTCAGTGAACTGCATTCCGGGAAGGGACATGCAGAGGCCTCAACCAGATTGCTCTGTGATTCCGGGAGGTGGGTTGAACTGCTTGAGAATCCCTTCTGCAAGGCCCCTCATTTGTGGGTTGGTTGGAAGCCCAGAGACTGATCCAAGCCCATCATCTCCATGA 1245 0.4771 MEKSWVLAFLLLQVLPTEGDFGVGAGIGVGIGNGDGGGGGGGASVWIGGGIDGQNPPGYTASSLSSAYTALQAWKSAITDDPLKVLRTWVGSNVCAYRGVFCADPEEDGSGQTGPVVAGIDLNRANLQGTLVKELSVLTDMSLLHLSGNRFTGTVPESFRYLLSLKELDLSNNHFSGPFPTVTLLMPNLIYLDIRFNNFAGPIPDDLFNKELDAIIINNNQFDGELPPNLGNSPASVINLANNKFSGNIPTSFAYMNPKLKEILFLNNQLTGCIPEGVGMWDGMEVLDLSHNSLMGHLPNSISCLEEIEVLNLAHNKLSGSLSDLVCSLRSIVNLTVAYNFFSGFGQECSKLFFRNVGFDFSVNCIPGRDMQRPQPDCSVIPGGGLNCLRIPSARPLICGLVGSPETDPSPSSP* 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g0273 414 Gene3D Ribonuclease Inhibitor 66 233 IPR032675 -
Vvi11g0273 414 SUPERFAMILY L domain-like 66 350 - -
Vvi11g0273 414 Pfam Leucine rich repeat N-terminal domain 67 102 IPR013210 -
Vvi11g0273 414 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 235 322 - -
Vvi11g0273 414 Gene3D Ribonuclease Inhibitor 234 353 IPR032675 -
Vvi11g0273 414 Pfam Leucine rich repeat 143 199 IPR001611 GO:0005515
Vvi11g0273 414 FunFam Leucine-rich repeat receptor-like kinase 69 187 - -
Vvi11g0273 414 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 60 405 - -
Vvi11g0273 414 Pfam Leucine Rich Repeat 285 304 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi11g0273 Vvi-Chr11 2341327 2342571 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi11g0273 39 381 Leucine-rich Repeat extension Gene Families AT3G24480 48.105 6.99e-101 307
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g0273 - - vvi:100254286 778.089