Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g0272 ATGAAGATCGAAGATTTGGATGATGTTGAATCTGATGGGAAGGAGAGTGTTTATAGAAGGCAGGTTGTTAAGGTTGATGCCAAGATGGCTTTGGTCGGGGCGGGGGCTCGGATCCTCTTCTACCCGACTCTTCTGTATAATGTGTTTCGGAACAAGATTCAGGCGGAGTTCAGATGGTGGGATGAAGTTGATCAGTTCCTTCTGCTTGGTGCGGTTCCATTTCCCAAGGATGTCCCACGGCTGAAGCAGCTTGGTGTAGGTGGCGTAATTACTTTAAATGAACCTTATGAAACTTTGGTTCCCACGTCCTTGTATCATGCTCATGAGATAGACCACCTGGTAATTCCCACAAGAGATTACCTTTTTGCTCCTTCATTTGTGGATATTAGCCGTGCTGTAGATTTCATTCATAAGAATGCATCTTCCGGTAGAACTACTTATGTTCATTGTAAAGCTGGACGAGGAAGGAGCACAACTATTGTGCTTTGCTATTTGGTTGAGTATAAGCACATGACACCTGCTGCTGCCCTGGAATATGTTCGTTCTAGAAGACCACGTGTGCTATTAGCTCCCTCACAGTGGAAGGCTGTTCAAGAATATAACAAGCGCCAATTAGCAACTACTACATCATATTCTCCATCTGGAGATGCAGTGCTGATAACAAAAGCAGATCTAGAAGGTTATCAAAGCAATTGTGATGATGCTGGCAAGGAGCTGGCAATTATTGCCCGAGTGGTGAGGGCTAGACCCATGGCAAGGCTGTCCTGCCTGTTTGCATCCTTGAAATTTTCTGGTGGCTGCGGACCTGTTTCTAGGCAGCTGTCTGAGGCACGTGCTTGTTAA 843 0.4579 MKIEDLDDVESDGKESVYRRQVVKVDAKMALVGAGARILFYPTLLYNVFRNKIQAEFRWWDEVDQFLLLGAVPFPKDVPRLKQLGVGGVITLNEPYETLVPTSLYHAHEIDHLVIPTRDYLFAPSFVDISRAVDFIHKNASSGRTTYVHCKAGRGRSTTIVLCYLVEYKHMTPAAALEYVRSRRPRVLLAPSQWKAVQEYNKRQLATTTSYSPSGDAVLITKADLEGYQSNCDDAGKELAIIARVVRARPMARLSCLFASLKFSGGCGPVSRQLSEARAC* 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g0272 280 PANTHER PHOSPHATIDYLINOSITOL PHOSPHATASE 1 259 - -
Vvi11g0272 280 SMART dsp_5 62 203 IPR020422 GO:0006470|GO:0008138
Vvi11g0272 280 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 52 202 IPR029021 -
Vvi11g0272 280 CDD PTPMT1 59 203 IPR044596 GO:0004721
Vvi11g0272 280 ProSiteProfiles Dual specificity protein phosphatase domain profile. 59 206 IPR020422 GO:0006470|GO:0008138
Vvi11g0272 280 FunFam Dual specificity phosphatase domain protein 59 206 - -
Vvi11g0272 280 Pfam Dual specificity phosphatase, catalytic domain 82 202 IPR000340 GO:0008138|GO:0016311
Vvi11g0272 280 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 127 195 IPR000387 GO:0016311|GO:0016791
Vvi11g0272 280 ProSitePatterns Tyrosine specific protein phosphatases active site. 148 158 IPR016130 GO:0016311|GO:0016791
Vvi11g0272 280 Gene3D Protein tyrosine phosphatase superfamily 59 207 IPR029021 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi11g0272 Vvi-Chr11 2332022 2335280 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi11g0272 6 262 Protein tyrosine phosphatase (PTP) family AT2G35680 54.000 7.09e-102 299
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g0272 - - vvi:100255975 563.148