Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g0271 ATGAATAAGACTCACTTGGGCTCCATCAGCAGCTCTGATCTCATTGATGCCAAGCTTGAAGAGCATCAGATGTGTGGATCCAAGCAGTGCCCCGGTTGCGGACACAAGCTCGAAACAAAGCCGGACTGGTTAGGTCTACCAGCTGGAGTGAAATTTGATCCAACAGACCAAGAACTGATAGAGCACCTTGAAGCAAAGGTAGAAGCCAAGGACATGAAATCTCACCCTTTGATAGATGAATTCATCCCTACCATTGAAGGAGAAGATGGGATATGCTATACTCATCCTGAAAAGCTTCCAGGAGTTACAAGAGATGGTTTGAGCAGGCATTTCTTCCATAGACCTTCCAAAGCCTACACTACTGGAACAAGAAAGAGAAGGAAAATTCAAACCGAATGCGATTTGCAAGGCGGAGAAACCCGGTGGCATAAAACCGGCAAGACCAGGCCGGTGATGGTGAATGGCAAACAGAAAGGGTGCAAGAAAATTCTAGTCCTCTATACGAATTTTGGGAAAAACAGAAAACCTGAAAAGACCAACTGGGTCATGCACCAGTACCACCTGGGGCAGCTTGAGGAAGAGAAAGAGGGTGAGCTTGTGGTCTCAAAGATATTCTATCAGACGCAACCAAGGCAATGTAATTGGTCCGACCGCAGTGCAACCACTGGTGAAGGAAACAGTGAGCCTAATAGCCGTCGAGATAGTGGTAGCGGGAGCTGTTCTTCCAAGGAAGTAATTCCCCAGAGAGATGAACTGTCTGGAGCTGGGGTTGGTGCTGCAATATCAAGTTACAGTCCTTTGGATATTCAGCAGTTGAAATCTGATCATTTTAGTTTTGCCCCATTCAGGAAAAGCTTTGATGAGGTGGGCATTGGAGAGGCTTCAACGGCAAGGGAGGCCCCAGCATCTGGAACATGCGAAGAGCATGAGATCCACGACCACCAGAGGCCACACCACGTGACCCATGACCCCCAACCCCAACCCCAACACCACCACCACCATCACCACCATCCACATCATCAACTCGCCACTGCTGCCTTCCACATCACCAGGCCTTCACATTCCATCTCCGCCATCATCTCTCCCCCACCCCTCCATCACACCTCCATTATTCTTGATGAAGACTCCTACCATGTCTCTAGAATAATGCTCCAAAATGAAAATTTTCAGGTAATAATGCACCCTCACATGTATTTTTCTTATTCGGCCTGCTTTTCTGACAGATAA 1227 0.4784 MNKTHLGSISSSDLIDAKLEEHQMCGSKQCPGCGHKLETKPDWLGLPAGVKFDPTDQELIEHLEAKVEAKDMKSHPLIDEFIPTIEGEDGICYTHPEKLPGVTRDGLSRHFFHRPSKAYTTGTRKRRKIQTECDLQGGETRWHKTGKTRPVMVNGKQKGCKKILVLYTNFGKNRKPEKTNWVMHQYHLGQLEEEKEGELVVSKIFYQTQPRQCNWSDRSATTGEGNSEPNSRRDSGSGSCSSKEVIPQRDELSGAGVGAAISSYSPLDIQQLKSDHFSFAPFRKSFDEVGIGEASTAREAPASGTCEEHEIHDHQRPHHVTHDPQPQPQHHHHHHHHPHHQLATAAFHITRPSHSISAIISPPPLHHTSIILDEDSYHVSRIMLQNENFQVIMHPHMYFSYSACFSDR* 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g0271 408 ProSiteProfiles NAC domain profile. 46 207 IPR003441 GO:0003677|GO:0006355
Vvi11g0271 408 SUPERFAMILY NAC domain 41 207 IPR036093 GO:0003677|GO:0006355
Vvi11g0271 408 MobiDBLite consensus disorder prediction 317 342 - -
Vvi11g0271 408 FunFam NAC domain-containing protein 73 55 211 - -
Vvi11g0271 408 Gene3D NAC domain 55 211 IPR036093 GO:0003677|GO:0006355
Vvi11g0271 408 MobiDBLite consensus disorder prediction 328 342 - -
Vvi11g0271 408 MobiDBLite consensus disorder prediction 215 246 - -
Vvi11g0271 408 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 11 316 IPR044799 GO:0003700
Vvi11g0271 408 MobiDBLite consensus disorder prediction 215 250 - -
Vvi11g0271 408 Pfam No apical meristem (NAM) protein 47 188 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi11g0271 Vvi-Chr11 2323525 2325646 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi11g0271 10 383 NAC Transcription Factor Family AT5G56620 56.110 2.19e-128 374
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vvi11g0271 NAM 2.7e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g0271 - - vvi:100261063 742.265