Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g0262 ATGATGATCGGAGAATCGCGCCATCCAAATCCGACGGTCCTGGTTCCTCCTTGGCCCCACTTTGACGATCCTACGGTTGATATATCTTTCCCGTATCCGGTAAGTGGTGTCTCCGTTAACTCTAACGCCAATGCTAACGGTCTTCAGGGCGGTGAACACTCCCCATTTCTTCTTGGGGAGGCGTTGACAGCGCTGCAACGTTATCTCCCGTCCAATGACGTTGATGTGGATTCGGACTCCGATATTTCCGGTCGTGAGGCCGACATTCCGGTGGACGCATACTCGTGCGATCATTTTCGGATGTTTGAGTTCAAGGTGAGGAGGTGCGCACGTGGGCGGTCGCATGACTGGACTGAGTGTCCGTACGCTCATCCAGGCGAGAAGGCTCGCCGCAGGGATCCTAGGAAATTTCACTATTCCGGCACGGCGTGTCCTGACTTCAGGAAGGGGAACTGCAAGAAGGGTGATTCGTGTGAGTTCGCGCATGGCGTATTTGAGTGTTGGCTCCACCCGGCTCGCTATCGCACCCAGCCATGTAAGGACGGGCCCAACTGTCGCCGGCGGGTTTGCTTCTTTGCTCACACGGCTGAGCAGCTGAGGGTTTTGCCTCAGCAGAGTCCGAGGACGCCTGGGTCGGTGGAGTCCTATGACGGGTCGCCGCTTAGGCAAGCGTTGGAAGCTTCCTGTGCAAAAACTCTGCCGTTTATGTCATCTCCAGGGTCGGTTTCCCCGCCGGGGTCGCCGCCGCCGGAGTCTCCGCCGATGTCTCCCATTACATCGAGTCTGAGCCGTTCACTGGGCTCGAACTCCATCAACGAAATGGTTGCGTCTCTACGACAACTCCAACTCAGCAAGGTGAAGTCAGCACCATCCTCATGGTGCGTTCATATGGGTTCTCCAGGTGGGTTCGGGTCTCCCAGAGCCTCCATAATCCGACCGGGCTTCTGCAGCTTGCCGTCGACCCCAACCAGAGCCCCGAAACGGCACGGCCTCGGGTTCGTGGACCTCTTCGAAGAAGAGCCAGCCATGGAGAGGGTGGAGTCAGGCAGAGACTTGCGAGCCAAGATGTTCGAAAAGTTGAGCAAGGAAAACTCTTTGGATCGACCCGACCCTTCAGCCTCAGGTGCTGGTCCAGATGTTGGGTGGGTGTCAGAGCTGGTAAAATTAATGAAAATCCCCATTTCCCAACTCCCAACAAGGATGCCTCGCCGGTATTTTACTTGTGGCGGATTTTTGGTAGTCTGCTTTATCCACATAAAGCTCAAAATCTTGCCCATTTATGAGCAAATATGGTAA 1296 0.554 MMIGESRHPNPTVLVPPWPHFDDPTVDISFPYPVSGVSVNSNANANGLQGGEHSPFLLGEALTALQRYLPSNDVDVDSDSDISGREADIPVDAYSCDHFRMFEFKVRRCARGRSHDWTECPYAHPGEKARRRDPRKFHYSGTACPDFRKGNCKKGDSCEFAHGVFECWLHPARYRTQPCKDGPNCRRRVCFFAHTAEQLRVLPQQSPRTPGSVESYDGSPLRQALEASCAKTLPFMSSPGSVSPPGSPPPESPPMSPITSSLSRSLGSNSINEMVASLRQLQLSKVKSAPSSWCVHMGSPGGFGSPRASIIRPGFCSLPSTPTRAPKRHGLGFVDLFEEEPAMERVESGRDLRAKMFEKLSKENSLDRPDPSASGAGPDVGWVSELVKLMKIPISQLPTRMPRRYFTCGGFLVVCFIHIKLKILPIYEQIW* 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g0262 431 Gene3D - 139 201 - -
Vvi11g0262 431 FunFam Zinc finger CCCH domain-containing protein 66 96 164 - -
Vvi11g0262 431 PANTHER UNKEMPT FAMILY MEMBER 54 388 IPR045234 -
Vvi11g0262 431 MobiDBLite consensus disorder prediction 241 256 - -
Vvi11g0262 431 ProSiteProfiles Zinc finger C3H1-type profile. 139 165 IPR000571 GO:0046872
Vvi11g0262 431 MobiDBLite consensus disorder prediction 236 265 - -
Vvi11g0262 431 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 143 163 IPR000571 GO:0046872
Vvi11g0262 431 SMART c3hfinal6 138 164 IPR000571 GO:0046872
Vvi11g0262 431 SMART c3hfinal6 173 196 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi11g0262 Vvi-Chr11 2199317 2201202 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi11g0262 88 257 C2H2 Transcription Factor Family AT5G12850 57.059 8.05e-57 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vvi11g0262 zf-CCCH 3.2e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g0262 - - vvi:100259323 747.273