Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g0261 ATGGGTAGAGCTCCTTGTTGTGACAAGGCTAATGTCAAGAGGGGACCATGGTCTCCTGAAGAGGACAACATTCTCAGGGCCTTTGTTGAGGCCCATGGCACTGGTGGTAACTGGATTGCTCTTCCTCGTAAAGCAGGGCTTAAGCGCTGCGGCAAGAGTTGCAGGTTGAGATGGCTCAATTATCTCAGACCAGACATCAAGCATGGAGGCTTTACTGAGGACGAAGACAACATTATCGTCACTCTCTACAACAACATCGGAAGCAGGTGGTCAGTCATAGCCTCACATCTGCCCCGGAGAACAGACAATGATGTGAAGAACTACTGGAACACCAAATTGAAGAAGAAGCTCTCAGGAAAAGCTGACCTTAAGAAAGGCAGCAACAACAATGGCAATGCAACTTCTAACAGCATCATTCATCTCAGCTCAGTACAGTTCCCGGGTTCCATCCCTAAAGTTGAGGACTATGATTATGGAATTTCAGTTGGTTTCGGTACAGATTCGAGCCCGGTGTCGTACCAAACAGGCATGAGTTACCAGCAAGATTTTCATTCACAGGGCCTGGTTTCAAATCCAGCTGTTCAATTCCCTCTCCCAGGGCCGATGGAAGTTTCTGAATTCAACACAAGTGGAAACACCAGCTACAGCATTTCATCATCTCAGGAAGTTTCAAGCCTTTCAGCTGCCTCATCTTCTCTGGCTCTAGACAACACCACTCATGCCTCCTGGTCCAGCTACAATGGAGGTAGAGTTCAAGATGATGAGTTCCTTTTCGACTTTGGATCCCCTTATGGACTCCTCAGTGGCTTTGGTTTTCAAGAACAAGCCCATGAAGCTGGTCTGGTCAATCAAATTTAG 858 0.4732 MGRAPCCDKANVKRGPWSPEEDNILRAFVEAHGTGGNWIALPRKAGLKRCGKSCRLRWLNYLRPDIKHGGFTEDEDNIIVTLYNNIGSRWSVIASHLPRRTDNDVKNYWNTKLKKKLSGKADLKKGSNNNGNATSNSIIHLSSVQFPGSIPKVEDYDYGISVGFGTDSSPVSYQTGMSYQQDFHSQGLVSNPAVQFPLPGPMEVSEFNTSGNTSYSISSSQEVSSLSAASSSLALDNTTHASWSSYNGGRVQDDEFLFDFGSPYGLLSGFGFQEQAHEAGLVNQI* 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g0261 285 Gene3D - 69 138 - -
Vvi11g0261 285 Gene3D - 7 68 - -
Vvi11g0261 285 CDD SANT 71 113 IPR001005 -
Vvi11g0261 285 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 67 117 IPR017930 -
Vvi11g0261 285 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Vvi11g0261 285 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Vvi11g0261 285 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Vvi11g0261 285 CDD SANT 16 62 IPR001005 -
Vvi11g0261 285 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Vvi11g0261 285 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 66 IPR017930 -
Vvi11g0261 285 PANTHER OS09G0431300 PROTEIN 1 244 - -
Vvi11g0261 285 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Vvi11g0261 285 SMART sant 67 115 IPR001005 -
Vvi11g0261 285 SMART sant 13 64 IPR001005 -
Vvi11g0261 285 FunFam Transcription factor RAX3 7 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi11g0261 Vvi-Chr11 2193249 2194450 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi11g0261 1 120 MYB Transcription Factor Family AT5G57620 77.500 6.61e-70 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vvi11g0261 Myb_DNA-binding 3e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g0261 K09422 - vvi:100243880 535.798