Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g0253 ATGGGTAAGGTTCACGGATCTCTGGCTCGTGCCGGTAAGGTGAGAGGCCAAACCCCAAAAGTGGCCAAGCAAGACAAGAAGAAGAAGCCCCGAGGTCGCGCTCACAAGCGCATGCAATACAACCGCCGATTCGTCACCGCCGTCGTGGGCTTCGGGAAGAAGAGGGGACCCAACTCGTCGGAGAAGTGA 189 0.582 MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK* 63
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g0253 62 MobiDBLite consensus disorder prediction 22 40 - -
Vvi11g0253 62 PANTHER 40S RIBOSOMAL PROTEIN S30/UBIQUITIN-LIKE PROTEIN FUBI 1 62 - -
Vvi11g0253 62 Pfam Ribosomal protein S30 3 59 IPR006846 GO:0003735|GO:0005840|GO:0006412
Vvi11g0253 62 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi11g0253 Vvi-Chr11 2144191 2144607 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi11g0253 1 62 Cytoplasmic Ribosomal Protein Gene Family AT5G56670 96.774 1.14e-30 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g0253 K02983 - egt:105965546 118.627