Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g0249 ATGGTGGAGAAGACAAAGGGAAGGAAGGAGGAAGTGGTTACCAGGGAGTACACCATTAACCTCCACAAGCGCTTACATGGATGCACATTCAAGAAGAAGGCTCCCAAGGCAATAAAGGAGATCAGGAAGTTTGCACAGAAGGCCATGGGAACAAAGGATGTGAGGGTGGATGTGAAGCTGAACAAGCACATTTGGAGCAGGGGAATTCGAAGTGTCCCAAGGAGGATTAGGGTTCGCATTGCTCGCAAGAGAAATGATGATGAAGATGCCAAGGAAGAGCTCTACTCTCTTGTTACTGTTGCAGAAATTCCCGCAGAAGGGTTGAAGGGTTTGGAAACCAAGATCATTGAAGAAGATGATTGA 363 0.4683 MVEKTKGRKEEVVTREYTINLHKRLHGCTFKKKAPKAIKEIRKFAQKAMGTKDVRVDVKLNKHIWSRGIRSVPRRIRVRIARKRNDDEDAKEELYSLVTVAEIPAEGLKGLETKIIEEDD* 121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g0249 120 Pfam Ribosomal protein L31e 11 92 IPR000054 GO:0003735|GO:0005840|GO:0006412
Vvi11g0249 120 PANTHER 60S RIBOSOMAL PROTEIN L31 2 118 IPR000054 GO:0003735|GO:0005840|GO:0006412
Vvi11g0249 120 Gene3D - 9 120 IPR023621 -
Vvi11g0249 120 FunFam 60S ribosomal protein L31 6 119 - -
Vvi11g0249 120 ProSitePatterns Ribosomal protein L31e signature. 54 68 IPR020052 GO:0003735|GO:0005840|GO:0006412
Vvi11g0249 120 SMART Ribosomal_L31e_2 10 93 IPR000054 GO:0003735|GO:0005840|GO:0006412
Vvi11g0249 120 CDD Ribosomal_L31e 9 92 IPR000054 GO:0003735|GO:0005840|GO:0006412
Vvi11g0249 120 SUPERFAMILY Ribosomal protein L31e 11 92 IPR023621 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi11g0249 Vvi-Chr11 2120879 2123024 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi11g0249 1 120 Cytoplasmic Ribosomal Protein Gene Family AT4G26230 86.667 4.07e-71 206
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g0249 K02910 - vvi:100267870 218.394