LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi11g0227	ATGGTGACGACTGAGCCACCCATCGTCTCCAGGTTGAAGAGGGAAGATTGTAAACGCACCAAACACGACTCTGAGTTCACCAAATGGAAGATTCTTGTTGGGCCTTCTGATTGGGAAGACCATTCGTCGAGGAAGGAAGGAGCAGAGAGATACAGAGTTCACAACCTCCCCTTATGCTGTCATTGTCCAGGAGTGTATGAGCTTGGCATAAGCGTGTCTCCCACTGGTTTAGGTCGTGAGGTTGGCAAGCTTGACCCTGCTCACATTGTTGTGGTTTACCTTGGACAAGCCGAAGATATTAGGGCAAGGCTCCAGCATTATGGTCGTTCAGGTGCTCATTTGGCTAAAGTTGACTCAACTGGTAACCCAAATAACTGTAAGAATATGCCTCTCCAAAGAGGGTCTGGATTGTTTGAAGGGATATTCTCAAGAGGTTACTCCATCGTCTTTAGATGGGCTCCAATAGAAAGCAAGAGGGATGCTGAGAGAACAGAATCTCGGCTGCTCAAGACATTTGATTATGCATGGAACAAAGGCAGTAATGGTGCACGTCGCCCCAGTGATGTCCTCAGGAAACTTGAGAAAACTTCTTCAAGCACTCCCCCATTTCCTAGTATTACTAGGAAGTTTCAAATGCTTGGCCAGAAGCAAGTGGGCATCATAATCAAAGCTAGCAAGCCATTTTTGCAGGAGAATGGGCTCAGTACTGATCAGGACATCAATTCTCTGCTTGCCCGAGTTTTCAAATTTGGCAGATCACAGCCACGATTAGTCTCAGACAGAGTTGGTGTTACTGGTAACTATAATAGTACTTGTGGGGTGGCTTTAGGTGATGGAACAATTTGTGAAAGGCCACCAGTTGAAGGAAGAAAGCGGTGCGCTGAACACAAAGGAATGAAGACGAAGAGCTCCTTCTCAAAGCCGATTGTAGAAAGGAAACCACAAATGGTTGATTTAAACCGAGAGTCTGAAGGTCACAGTGCCCAGAGTTATGGCTATACAGTGAATTTTCAACTGGTTGGGGGCAAATGTCCTGTGAATAAGGACTTCACCATTATTTGTGGAGTTATCTTGGATGATGGCTTTCCTTGTAAAAGGCAACCAGTTCTAGGGAGGAAAAGGTGTGAAGAGCATAAAGGAATGAGAACCAACGTTTCAATTTCAAACTCCACAGTAGGGAAATCCCATCACACATATGAAAGCAAGTTGCAGCCCCAAGTTCTCCCAGACTGCAGGTCTTTTTCCAACACGGACTACGGTATTACTTGTGGAGTGGATTTAGGTCATGGGATTTTCTGTAAAAGACTGGCTGTTGCTGGAAGAAAAAGGTGTGAGGAGCATAAAGGAATGAGGATCAACAGCCTCATCTCTACGCTAGCAGGCGAAGACAAATCCCATGCTTTGGATATGGGTTCAGGATTCATCACTTATAACAACTCGAATTATAACCATACTTCAACCTGTGGGATGACCTTAGGTGATGGTTCTATCTGCAAGAGACAACCAGTGGAAGGAAACAAGAGATGTTGGCAGCACAAAGGCATGAGGGTCAATTGTTCCTCCTCTTGGTTTGGATCAGAAACAACTTTATGTGGCGTACTCCTACGGAATGGATCTGTGTGCAGCAGAGTCCCTGCCCATGGAAGGAAGAGGTGTGAGCAGCACAAGGGGATGAGGCTATGA	1683	0.4575	MVTTEPPIVSRLKREDCKRTKHDSEFTKWKILVGPSDWEDHSSRKEGAERYRVHNLPLCCHCPGVYELGISVSPTGLGREVGKLDPAHIVVVYLGQAEDIRARLQHYGRSGAHLAKVDSTGNPNNCKNMPLQRGSGLFEGIFSRGYSIVFRWAPIESKRDAERTESRLLKTFDYAWNKGSNGARRPSDVLRKLEKTSSSTPPFPSITRKFQMLGQKQVGIIIKASKPFLQENGLSTDQDINSLLARVFKFGRSQPRLVSDRVGVTGNYNSTCGVALGDGTICERPPVEGRKRCAEHKGMKTKSSFSKPIVERKPQMVDLNRESEGHSAQSYGYTVNFQLVGGKCPVNKDFTIICGVILDDGFPCKRQPVLGRKRCEEHKGMRTNVSISNSTVGKSHHTYESKLQPQVLPDCRSFSNTDYGITCGVDLGHGIFCKRLAVAGRKRCEEHKGMRINSLISTLAGEDKSHALDMGSGFITYNNSNYNHTSTCGMTLGDGSICKRQPVEGNKRCWQHKGMRVNCSSSWFGSETTLCGVLLRNGSVCSRVPAHGRKRCEQHKGMRL*	561

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vvi11g0227	560	Pfam	GIY-YIG domain-containing protein	26	190	-	-
	Vvi11g0227	560	PANTHER	PROTEIN EFFECTOR OF TRANSCRIPTION 2-RELATED	479	522	IPR038909	GO:0003677\|GO:0006355

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vvi11g0227	337	560	HRT Transcription Factor Family	AT5G56780	38.362	1.25e-34	135

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HRT	Vvi11g0227		None	None	None

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vvi11g0227	-		-	vvi:100264589	1150.96