Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g0226 ATGATGCTTCAACTCCATGATGTTTACGACCCTGATATGATAAATGTGAAGATAAAAATTGTTTCTGGCTCACGATCTGGAGTAGTGGCAGCTGAAGCCAAGAGTGTTCAAACAAACTGGATTGTCTTGGATAAACGGCTGAAGCATGAAGCAAAGCACTGCATGGAAGAGCTGCAATGCAACCTAGTGGTTATGAAACGATCTCGACCAAAGGTTCTTCGTTTGAATTTGACTGGATCATCAAAGAAGGAACCTGAAGTGGCTTGCCCATTACAGTCAATATCAGAAGCATCTGAAGGACATCTAAAAAATAAGCATGATGACATGCCAAATGCGATCCGAGGTCCTGTTGTCACTCCAGCAAGTAGTCCAGAACATGGGACAACATTCACTTCGACTGACATTGGAACTTCATCAATGTCAAGCTCAGATCCAGGGAATTCACCTTTTTTCATTCCCAGAATTAGCAGGGACCTGAAGATGGAGGATGCATTAACCACTGAAGGTAACCCACTTTTGGATGAATCTGACTCTGATACAGACAGTGAAAAGCTGGGTCCTCGAACAAGGTTATGTTTCCAGACATGGCTGGTGGAGAATATTCTCAGTTCTGGTGGTGAATTCTCAAAGCATTTGGTGGAAGGTTCACGAAAACCCAGCGATAAAGCTCTAGCTTTCAAATCTGGTATGTTGCTGGACAAGTTCTCCCAACTTGATCCAGAACCTGAAGTTGGAGTGCTGAACTATAAGTTTGACCTGGAGTCAGGTATAAATGTGAGAGAAGTAATTTCATTATCTGGAAATACACCTCCTGGACCTCCTCCACTGTGTTCAATTTGTCAGCATAAGGCGCCTGTATTTGGAAAACCTCCAAGGTGGTTCACCTATGCTGAGCTAGAACTTGCTACAGGTGGATTTTCACATGTTAATTTCTTGGCAGAAGGTGGATTTGGTTCTGTGCATAGAGGGATCTTACCAGATGGTCAGGTTGTTGCTGTTAAGCAACATAAATTGGCTAGTTCTCAGGGTGATCTCGAATTTTGCTCAGAAGTGGAGGTCCTAAGCTGTGCACAGCATCGCAATGTTGTGATGCTAATCGGGTTCTGTGTGGAGGATGGAAGAAGGTTGCTGGTTTATGAATATATCTGCAATGGGTCTTTGGATTCCCATCTTTATGGACGTGATCGAGGTCTGCTAGAATGGTCTGCACGACAAAAAATTGCAGTTGGAGCTGCTCGAGGATTGAGATATCTTCATGAAGAATGCAGAGTGGGTTGTATTGTCCACCGCGATATGCGGCCTAACAATATCCTCATCACGCATGATTTTGAACCATTAGTTGGAGATTTTGGACTGGCAAGGTGGCAGCCAGATGGAGACATGGGAGTGGAAACACGAATAATTGGAACATTTGGGTACCTGTCTCCAGAATATGCTCAAAGTGGCCAAATCACAGAAAAAGCTGATGTATACTCCTTTGGAGTAGTGTTGGTGGAGCTCATTACAGGACGGAAAGCTATGGATATAAACCGGCCAAAGGGTCAGCAGTGCCTCACTGAATGGGCACGCCCTTTGCTAGAACAATGTGCCATTGATGAACTGGTTGACCCACGCCTAAGGAACTGCTATTCGGAGAAAGAAGTTTCTGGCATGCTGCATTGTGCCTCCTTGTGCATCCAACGGGATCCTCATTCTAGGCCCCGCATGTCTCAGGTGCTTCGAATATTAGAGGGTGATATTTTCATGAACTCGACTGGTTATATGTCAAAAAACTTGGCCTATGATGTGGGGAACAGCAGGGAAGGGATGTGGCCAGAACAGCTGCAACAGCATCAACGATACAGTGGCCCAATCTCAAATGGAGCAGCCCAAAGAGCTCGAAGATCAGCTCACTGGGAGCGAAGAAGTGTAGACGGCTTCATGTGA 1926 0.4517 MMLQLHDVYDPDMINVKIKIVSGSRSGVVAAEAKSVQTNWIVLDKRLKHEAKHCMEELQCNLVVMKRSRPKVLRLNLTGSSKKEPEVACPLQSISEASEGHLKNKHDDMPNAIRGPVVTPASSPEHGTTFTSTDIGTSSMSSSDPGNSPFFIPRISRDLKMEDALTTEGNPLLDESDSDTDSEKLGPRTRLCFQTWLVENILSSGGEFSKHLVEGSRKPSDKALAFKSGMLLDKFSQLDPEPEVGVLNYKFDLESGINVREVISLSGNTPPGPPPLCSICQHKAPVFGKPPRWFTYAELELATGGFSHVNFLAEGGFGSVHRGILPDGQVVAVKQHKLASSQGDLEFCSEVEVLSCAQHRNVVMLIGFCVEDGRRLLVYEYICNGSLDSHLYGRDRGLLEWSARQKIAVGAARGLRYLHEECRVGCIVHRDMRPNNILITHDFEPLVGDFGLARWQPDGDMGVETRIIGTFGYLSPEYAQSGQITEKADVYSFGVVLVELITGRKAMDINRPKGQQCLTEWARPLLEQCAIDELVDPRLRNCYSEKEVSGMLHCASLCIQRDPHSRPRMSQVLRILEGDIFMNSTGYMSKNLAYDVGNSREGMWPEQLQQHQRYSGPISNGAAQRARRSAHWERRSVDGFM* 642
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g0226 641 MobiDBLite consensus disorder prediction 122 149 - -
Vvi11g0226 641 Gene3D Phosphorylase Kinase; domain 1 278 381 - -
Vvi11g0226 641 PANTHER OS01G0750732 PROTEIN 267 590 - -
Vvi11g0226 641 Gene3D Transferase(Phosphotransferase) domain 1 382 591 - -
Vvi11g0226 641 Pfam Protein tyrosine and serine/threonine kinase 311 575 IPR001245 GO:0004672|GO:0006468
Vvi11g0226 641 ProSitePatterns Tyrosine protein kinases specific active-site signature. 427 439 IPR008266 GO:0004672|GO:0006468
Vvi11g0226 641 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 278 381 - -
Vvi11g0226 641 CDD STKc_IRAK 312 578 - -
Vvi11g0226 641 SUPERFAMILY Protein kinase-like (PK-like) 290 580 IPR011009 -
Vvi11g0226 641 ProSiteProfiles Protein kinase domain profile. 306 582 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi11g0226 641 MobiDBLite consensus disorder prediction 116 152 - -
Vvi11g0226 641 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 382 585 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi11g0226 Vvi-Chr11 1961169 1965214 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi11g0226 286 597 Trihelix Transcription Factor Family AT1G70460 50.784 7.91e-99 316
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-2 Vvi11g0226 PK_Tyr_Ser-Thr 1.1e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g0226 - - vvi:100242363 1287.32