Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g0224 ATGGGCAGAAAGTGCTCACATTGTGGAAACATAGGCCATAATTCAAGGACCTGTATCAGTTACAAGGGCACCGTTGTTGGCGGACTCAGGCTCTTTGGGGTGCAACTTGACCTATCTTCATCTTCTATTGCTATGAAGAAGAGTTTTAGCATGGAGAGCTTGCCGTCATCATTAGCCTCGTCACCTTCCCCATCTTCTTCATTATGCTCATCACGAGTTTCAATGGATGAGAATTCTGATAAAGCCATGAATGGCTATCTCTCTGATGGTCTTATAGCTAGAAGCCAAGAGAGGAAGAAGGGAGTCCCATGGACAGAGGAGGAGCATCGGACGTTTCTAGCTGGGCTTGAGAAGCTAGGGAAGGGTGACTGGAGGGGGATCTCTAGAAACTTTGTGACTACAAGAACTCCAACCCAAGTGGCCAGCCATGCTCAGAAGTATTTTCTCCGACAGGCGACCCTCAGCAAGAAGAAGCGGCGTTCAAGCCTCTTCGACATGGTTGGGAATAGCAACATGGCTGGTCAACATGTATACAGTTTTTGTCCCAAACCGAGCGATCACATTCCCACACAATACCTCAACATAGCAAGCTCTCAATATGAAGGTCGCCAGGAAACCTCTCTGCCCCTGCAGATAGACCTTAATTCCTCTGGAAAAGTTATTAAATCAGATAATCCAGAAACTGACCATTCTCAACTACCTCCATCCCATAATACCGTGCCAGTTTGGCTATATGGATTGATCGATTCCCGACCACAGCCTGCAGCTGCAACAAAACCCGTTCCTCCAAATGCAGTACCTGATGATCTAGAGCTCACACTTGCTCCTAGGCCTCGGGATCGAAAGAAATCATCCCCAACTTCCCTTTTAATTGGAGCAATTAGTGTTGTCTAA 894 0.4698 MGRKCSHCGNIGHNSRTCISYKGTVVGGLRLFGVQLDLSSSSIAMKKSFSMESLPSSLASSPSPSSSLCSSRVSMDENSDKAMNGYLSDGLIARSQERKKGVPWTEEEHRTFLAGLEKLGKGDWRGISRNFVTTRTPTQVASHAQKYFLRQATLSKKKRRSSLFDMVGNSNMAGQHVYSFCPKPSDHIPTQYLNIASSQYEGRQETSLPLQIDLNSSGKVIKSDNPETDHSQLPPSHNTVPVWLYGLIDSRPQPAAATKPVPPNAVPDDLELTLAPRPRDRKKSSPTSLLIGAISVV* 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g0224 297 Pfam Myb-like DNA-binding domain 103 148 IPR001005 -
Vvi11g0224 297 MobiDBLite consensus disorder prediction 218 237 - -
Vvi11g0224 297 ProSiteProfiles Myb-like domain profile. 96 148 IPR001005 -
Vvi11g0224 297 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 96 152 IPR017930 -
Vvi11g0224 297 FunFam transcription factor MYB1R1 102 153 - -
Vvi11g0224 297 MobiDBLite consensus disorder prediction 254 286 - -
Vvi11g0224 297 CDD SANT 103 148 IPR001005 -
Vvi11g0224 297 SUPERFAMILY Homeodomain-like 97 152 IPR009057 -
Vvi11g0224 297 Gene3D - 102 154 - -
Vvi11g0224 297 ProSiteProfiles Zinc finger CCHC-type profile. 3 18 IPR001878 GO:0003676|GO:0008270
Vvi11g0224 297 ProSiteProfiles SANT domain profile. 104 152 IPR017884 -
Vvi11g0224 297 PANTHER TRANSCRIPTION FACTOR KUA1 3 235 - -
Vvi11g0224 297 NCBIfam myb-like DNA-binding domain, SHAQKYF class 99 151 IPR006447 GO:0003677
Vvi11g0224 297 SMART sant 100 150 IPR001005 -
Vvi11g0224 297 MobiDBLite consensus disorder prediction 54 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi11g0224 Vvi-Chr11 1948727 1950383 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vvi11g0224 Myb_DNA-binding 2.4e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g0224 - - vvi:100247499 558.525