Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g0208 ATGATCTCACTCCTCAGAAGAACCAAGCTCCTAACCTTAACCCTAACCTCAAACCCTAGAACCCTCCGCCCATTTCTCCGTTTTCTCTCATCTTCCTCCAAATTCCCCGAATATGAAATGCCCTCGGTCACATGGGGCGTCGTCCTAGGCCGCAAAGAGAGACTAGTCTCTCGTGTTATCATCTCCGACTACCTCAAAACCCTCGGCATCATCCCAGATGAGCTCGAACAAGTTGAACTCCCCTCTACGGTCGAAGTCATGCGAGAACGGGTGGAATTTCTCCAGAAACTGGGAGTCACCATTGACCACTTAAATGAGTACCCGTTAATGCTCGGATGCAGTGTCCGAAAAAATATGATTCCAGTTTTGGGTTATTTGGAGAAAATCGGGATTCCTCGATCGAAACTTGGTGAATTCGTGGTGAATTACCCGCAAGTGTTACATGCCAGCGTGGTGGTTGAATTGGCTCCTGTAGTGAAGTTCCTTAGAGGGCTTGATGTGGATAAGCAGGACATCGGTTATGTCTTGATGAAGTATCCTGAGCTTTTAGGGTTTAAGTTGGAGGGAACTATGAGCACTTCTGTGGCCTATTTAGTGAGTATTGGAGTGAGTCCGAGGGATATTGGACCGATGGTGACACAGTATCCCTATTTTTTAGGAATGAGAGTGGGGACTGTGATTAAACCCATTGTTGATTACTTGGTTTCATTGGGTTTACCCAAGAAGGTGTTGGCAAGGATGTTTGAGAAGCGGGCATATGTGCTTGGGTACGATTTGGAGGAGTGTATTAAGCCCAATGTGGATTGTTTGGTTAGCTTTGGGATTAGGAGGGAGGCGCTTGCTTCGGTTATAGCACAGTTCCCACAAATTCTTGGGTTGCCTTTGAAAGCTAAGTTGTCATCACAACAGTACTTCTTTAATTTGAAGCTCAAGATTGATCCGGATGGTTTTGCTAGAGTGATTGAGAGGATGCCACAAATAGTTAGTCTTAACCAGAATGTAATTATGAAACCTGTTGAGTTCCTCCTTGGGAGAGGAATACCAGCTGTGGATGTGGCAAAGATGGTTGTGAAATGTCCCCAGTTAGTGGCATTGCGGGTTGAGCTAATGAAAAATGGCTATTACTTTTTTAAAAGTGAGATGGGGAGACAGGTGAAAGAGCTTGTGGAGTTTCCAGAATACTTTACCTATAGTTTGGAATCTCGGATCAAACCCAGGTATCAGAGGTTGCAAAGCAAGGGGGTGAGGAGTTCACTGGATTGGTTCCTGAACTGTAGTGACCAGAGATTTGAAGAGAGACTACAGGCTGATTACATTGAAATGGAGACTATTGGTCCATCATTTTGTATGGGTGGGAAATTGCAGTTACCGGGGAATGAGGTTGTGTCAGATGAGGAAGATGAGAGCGATGATGAAGAACTTTACAGACGCACTGTTTCCCTTTAG 1446 0.4509 MISLLRRTKLLTLTLTSNPRTLRPFLRFLSSSSKFPEYEMPSVTWGVVLGRKERLVSRVIISDYLKTLGIIPDELEQVELPSTVEVMRERVEFLQKLGVTIDHLNEYPLMLGCSVRKNMIPVLGYLEKIGIPRSKLGEFVVNYPQVLHASVVVELAPVVKFLRGLDVDKQDIGYVLMKYPELLGFKLEGTMSTSVAYLVSIGVSPRDIGPMVTQYPYFLGMRVGTVIKPIVDYLVSLGLPKKVLARMFEKRAYVLGYDLEECIKPNVDCLVSFGIRREALASVIAQFPQILGLPLKAKLSSQQYFFNLKLKIDPDGFARVIERMPQIVSLNQNVIMKPVEFLLGRGIPAVDVAKMVVKCPQLVALRVELMKNGYYFFKSEMGRQVKELVEFPEYFTYSLESRIKPRYQRLQSKGVRSSLDWFLNCSDQRFEERLQADYIEMETIGPSFCMGGKLQLPGNEVVSDEEDESDDEELYRRTVSL* 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g0208 481 FunFam Transcription termination factor MTERF4, chloroplastic 225 439 - -
Vvi11g0208 481 Gene3D Transcription termination factor 3, mitochondrial 227 441 IPR038538 -
Vvi11g0208 481 Gene3D Transcription termination factor 3, mitochondrial 87 226 IPR038538 -
Vvi11g0208 481 Pfam mTERF 123 431 IPR003690 GO:0003690|GO:0006355
Vvi11g0208 481 SMART mt_12 101 132 IPR003690 GO:0003690|GO:0006355
Vvi11g0208 481 SMART mt_12 173 204 IPR003690 GO:0003690|GO:0006355
Vvi11g0208 481 SMART mt_12 385 416 IPR003690 GO:0003690|GO:0006355
Vvi11g0208 481 SMART mt_12 245 276 IPR003690 GO:0003690|GO:0006355
Vvi11g0208 481 SMART mt_12 72 100 IPR003690 GO:0003690|GO:0006355
Vvi11g0208 481 SMART mt_12 209 240 IPR003690 GO:0003690|GO:0006355
Vvi11g0208 481 SMART mt_12 318 348 IPR003690 GO:0003690|GO:0006355
Vvi11g0208 481 SMART mt_12 281 313 IPR003690 GO:0003690|GO:0006355
Vvi11g0208 481 SMART mt_12 137 168 IPR003690 GO:0003690|GO:0006355
Vvi11g0208 481 SMART mt_12 353 384 IPR003690 GO:0003690|GO:0006355
Vvi11g0208 481 FunFam Transcription termination factor mterf4, chloroplastic 87 224 - -
Vvi11g0208 481 MobiDBLite consensus disorder prediction 460 481 - -
Vvi11g0208 481 PANTHER CGI-12 PROTEIN-RELATED 121 252 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi11g0208 Vvi-Chr11 1835708 1837153 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Vvi11g0208 mTERF 3.7e-106 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g0208 K15032 - vvi:100255927 906.36