Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g0205 ATGACTCCAAATTACCTAAATTCACCACCTCCTCCTCCTTTTCCTTTACAGCTCAATGAAGATCAACACCATCAGCTTCTCTTCAGTCCAAAGCCTCAACCTTCTTCTTCTTCATCTTCTTCTCTAACATGTCCTATTTTCTTCAGCCCAACTAAGGAGCAAGGTGGATGTCACTATAGGGATTTACACCAGGCACAACCTCAACAAGAGGTAGCTCATGATAAATTTGTTTTCCGGGGTGGATCATATGATCATCCAACACTGGAGAGTGAGAGTGACAATGGCCTCAAGTTAACCATTTGGAAGACAGAAGACAGAAATGAAAATCACAGTGAAAATGGCTCAGTTAAGTGGATGTCTTCAAAGATGAGGGTGATGCAGAAGATGATGATCTCGGATCAAACTGGTGCCCAAAAACCAAGCAACACTGCACTCAATTTTGGAGATCACAAGCAGCAATCCTTGCCTTCTGAAACCGATTACAATAGCATCAATTCCTCTAATATCAACAGCAACAACACAATTAGGGTTTGTGCAGATTGTAACACAACTAAGACCCCTCTGTGGAGGAGTGGCCCAAGAGGCCCTAAGTCTCTCTGCAACGCCTGCGGAATCAGGCAAAGGAAGGCTAGACGGGCCATGGCTGCTGCTGCTGCAACTGCTAATGGCACAATTCTTCCAACCAACACAGCACCCACAAAGACCAAGGCCAAGCACAAAGACAAGAAGTCGAGCAATGGTCATGTTTCACACTACAAGAAACGGTGCAAACTGGCTGCGGCCCCATCTTGTGAAACAAAGAAGCTTTGTTTCGAGGACTTCACCATAAGCTTGAGTAAGAATTCCGCTTTCCACCGAGTTTTCCTCCAAGACGAGATCAAGGAAGCGGCGATCCTGCTAATGGCTCTATCTTGCGGCCTCGTCCATGGTTGA 933 0.4587 MTPNYLNSPPPPPFPLQLNEDQHHQLLFSPKPQPSSSSSSSLTCPIFFSPTKEQGGCHYRDLHQAQPQQEVAHDKFVFRGGSYDHPTLESESDNGLKLTIWKTEDRNENHSENGSVKWMSSKMRVMQKMMISDQTGAQKPSNTALNFGDHKQQSLPSETDYNSINSSNINSNNTIRVCADCNTTKTPLWRSGPRGPKSLCNACGIRQRKARRAMAAAAATANGTILPTNTAPTKTKAKHKDKKSSNGHVSHYKKRCKLAAAPSCETKKLCFEDFTISLSKNSAFHRVFLQDEIKEAAILLMALSCGLVHG* 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g0205 310 Gene3D - 173 255 IPR013088 GO:0006355|GO:0008270
Vvi11g0205 310 CDD ZnF_GATA 177 205 IPR000679 GO:0006355|GO:0043565
Vvi11g0205 310 ProSitePatterns GATA-type zinc finger domain. 178 203 IPR000679 GO:0006355|GO:0043565
Vvi11g0205 310 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 171 212 - -
Vvi11g0205 310 FunFam GATA transcription factor 21 172 251 - -
Vvi11g0205 310 PANTHER GATA TRANSCRIPTION FACTOR 22-RELATED 1 310 - -
Vvi11g0205 310 Pfam GATA zinc finger 178 211 IPR000679 GO:0006355|GO:0043565
Vvi11g0205 310 SMART GATA_3 172 223 IPR000679 GO:0006355|GO:0043565
Vvi11g0205 310 ProSiteProfiles GATA-type zinc finger domain profile. 172 208 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi11g0205 Vvi-Chr11 1818033 1819178 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi11g0205 61 310 C2C2-Gata Transcription Factor Family AT4G26150 37.631 1.01e-33 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Vvi11g0205 GATA 6e-17 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g0205 - - vvi:100261004 536.954