Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g0198 ATGTCTCTCTCTGTCTTAAAGGTTGGCTGTTACTCAGGATATGATATGGAGGCTAGTGAAGCTCTGTGCCATTGCCTCTTGCTTGTTTATTCAAGGATCTACAGGAGACACGACACCCAGTACAGGGGAGTGAGGAGGAGGAACGGGAACATGTGGGTGTGCGAGCTGCGGGAGCCCAATAAGAAGTCGAGAATATGGCTGGGGACGAATCAAACTGCCGAGATGGCTGCCCGGGCGCATGATGTTGCTGCATTAGCGTTTAGGGGCCGGAAGGCCTGTTTGAATTTTGCTGACTCTGCGTGGAGTTTGCCCGTGGTACAATATATCTCCAACTCCATCAACTTTTCCTCCAATTTCTTCCATAGAAGGACGACCTGGTGTTGTCCACCGAGGAAAGTCATTGAGAAGCAATGCACCAAGTCCATCACTTCAGATAAATGGTAG 444 0.4977 MSLSVLKVGCYSGYDMEASEALCHCLLLVYSRIYRRHDTQYRGVRRRNGNMWVCELREPNKKSRIWLGTNQTAEMAARAHDVAALAFRGRKACLNFADSAWSLPVVQYISNSINFSSNFFHRRTTWCCPPRKVIEKQCTKSITSDKW* 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g0198 147 Pfam AP2 domain 40 89 IPR001471 GO:0003700|GO:0006355
Vvi11g0198 147 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 35 107 IPR045277 GO:0003700
Vvi11g0198 147 CDD AP2 39 99 IPR001471 GO:0003700|GO:0006355
Vvi11g0198 147 SUPERFAMILY DNA-binding domain 40 99 IPR016177 GO:0003677
Vvi11g0198 147 PRINTS Ethylene responsive element binding protein signature 41 52 IPR001471 GO:0003700|GO:0006355
Vvi11g0198 147 PRINTS Ethylene responsive element binding protein signature 63 79 IPR001471 GO:0003700|GO:0006355
Vvi11g0198 147 SMART rav1_2 40 103 IPR001471 GO:0003700|GO:0006355
Vvi11g0198 147 Gene3D AP2/ERF domain 39 98 IPR036955 GO:0003700|GO:0006355
Vvi11g0198 147 ProSiteProfiles AP2/ERF domain profile. 40 97 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi11g0198 Vvi-Chr11 1758586 1761259 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi11g0198 41 107 AP2-EREBP Transcription Factor Family AT4G25480 80.597 4.64e-34 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vvi11g0198 AP2 6.1e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g0198 - - vvi:100253072 131.724