Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g0197 ATGGCTCCTCCCAGAATTCTACTCTGCGGAGATGTTCTCGGCCGCCTCAACCAGCTCGTTAAGCGAATCTTATCGGTTAACAAATCAGCTGGTCCATTCGATGCGGTTCTCTGTGTGGGCCAGTTCTTCCCGGACTCGCCGGAGCGGCTCCTGGAGTTCATGGACTACATTGAAGGACGTTCTCAAATTCCTCTTCCGACGTACTTTATCGGCGACTACGGAATCGGTGCGGCCAAAGTTCTCTCGGCCGCTTCCAAGGATTCGGCGAATCTAGGGTTCAAGATGGATGGTTTGAGGATATGTGATAATTTGTATTGGTTGAAAGGCAGTGGCAAGTTCACACTCCATGGGTTATCTGTGGTCTACATTTCTGGTAGGCGTTCATTGGATGGTCAGCAATTTGGAAAATACAGTCAAGATGATGTTGATGCATTGCGGGCATTGGCAGATGAGTCTGGAATAGTTGATTTGTTCTTAACTAATGAATGGCCCAGTGGTGTCACAAAAGGGGCTGTTACATCTAATATTCCTCCAGGAATCTCAGATTCATCAGGTTGTGATTCTGCCATATCGGAGCTAGTAGGGGAAATTAAACCTCGCTATCACATTGCTGGTACAAAGGGCATATTCTATGATCGAGAACCATACTCCAATCTTGATGCTGTGCACGTAACCCGCTTTTTAGGTCTTGCTCCTGTTGGAAATAAAGATAAACAGAAATTTATTCATGCCATTTCTCCCATTCCAGCATCTACGATGTCTTCGGCTGAGATTTCCATGAAGCCACCAAATACTACCTTATTTCCTTATAAAATTATTGAAGAGACAGCTCCCACTAATCAAGCAACAAAGAGACCAAGTGACAGTATTTCTGACACACAATATTGGCGTTATGATGTCTCCCAAAAACGGCAAAAACATGGAGCTGGAGATGGTGATAAGCTGTGTTTTAAATTTGTATCTTCTGGGTCTTGTCCACGTGGGAACAAATGCAACTTTCTGCACGACACAGAAGCAAGGGAACAATACATGAGGGGGGTTTGTTTTGATTTTATTAACAAGGGCAAATGTGAAAGGGGTCCAGATTGCAACTTTAAGCACAGCTTACAGGATGAAGATGAGGGTTTTGCTAGCAGGAGGTCTGGATCTGAAAATGCCAAGTCTAGCAGGTCAAAACGCTGTTGGTTCTGTTTGTCGAGCCCTGATGTGGAATCACATTTAATCATCAGCATAGGAGAAAGTTACTACTGTGCACTAGCTAAAGGCCCACTTGTTGAGGACCAAGTACTGGTAATACCTGTTGAGCATTCAGCTAATACCCTTTCTTTGCCCCCGGAGTGCGAGATAGAGCTAGATAGATTTCAGAAGAGTTTGAAGATGTATTTCAGGACACAAGGGAAGGAGGTTGTTTTCTTTGAGTGGATCTTCAAACGTGGCACTCATGCTAATATTCAGGCTGTTCCTATTCCACTATCTAGGGCTTCTGCTGTTAAAAATATATTTATTTTAGCTGCTGAAAAGCTGGGGTTTCAATTTGTGACCACCAAAAGTAATAATGATTCTGAAGGGAGAAAATCATTGAGGGCACAGTTTGATGATAAAATCAGTTTCTTCTATGTGGAACTCCCTGATGGCACAATACTGTCACATGCTATTGAGGATAATGAGAAATTCCCTGTACAATTTGGACGCGAAGTTCTTGCTGGGTTGCTGAACATGGCAGATAGAGCTGATTGGAGGAATTGTAAGCAAAGCAAAGAAGATGAGATGAAGATGGCAGAAGTTTTCAAGAATCAATTTAAAAAATTTGACCCGTATCAATGA 1824 0.4309 MAPPRILLCGDVLGRLNQLVKRILSVNKSAGPFDAVLCVGQFFPDSPERLLEFMDYIEGRSQIPLPTYFIGDYGIGAAKVLSAASKDSANLGFKMDGLRICDNLYWLKGSGKFTLHGLSVVYISGRRSLDGQQFGKYSQDDVDALRALADESGIVDLFLTNEWPSGVTKGAVTSNIPPGISDSSGCDSAISELVGEIKPRYHIAGTKGIFYDREPYSNLDAVHVTRFLGLAPVGNKDKQKFIHAISPIPASTMSSAEISMKPPNTTLFPYKIIEETAPTNQATKRPSDSISDTQYWRYDVSQKRQKHGAGDGDKLCFKFVSSGSCPRGNKCNFLHDTEAREQYMRGVCFDFINKGKCERGPDCNFKHSLQDEDEGFASRRSGSENAKSSRSKRCWFCLSSPDVESHLIISIGESYYCALAKGPLVEDQVLVIPVEHSANTLSLPPECEIELDRFQKSLKMYFRTQGKEVVFFEWIFKRGTHANIQAVPIPLSRASAVKNIFILAAEKLGFQFVTTKSNNDSEGRKSLRAQFDDKISFFYVELPDGTILSHAIEDNEKFPVQFGREVLAGLLNMADRADWRNCKQSKEDEMKMAEVFKNQFKKFDPYQ* 608
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g0197 607 ProSiteProfiles Zinc finger C3H1-type profile. 342 370 IPR000571 GO:0046872
Vvi11g0197 607 PANTHER CWF19, CELL CYCLE CONTROL PROTEIN 5 607 IPR040194 -
Vvi11g0197 607 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 315 336 IPR000571 GO:0046872
Vvi11g0197 607 ProSiteProfiles Zinc finger C3H1-type profile. 310 338 IPR000571 GO:0046872
Vvi11g0197 607 SUPERFAMILY CCCH zinc finger 314 339 IPR036855 GO:0046872
Vvi11g0197 607 Pfam Protein similar to CwfJ C-terminus 2 516 604 IPR006767 -
Vvi11g0197 607 Pfam Protein similar to CwfJ C-terminus 1 387 501 IPR006768 -
Vvi11g0197 607 SMART c3hfinal6 312 337 IPR000571 GO:0046872
Vvi11g0197 607 SMART c3hfinal6 344 369 IPR000571 GO:0046872
Vvi11g0197 607 Gene3D - 299 373 - -
Vvi11g0197 607 SUPERFAMILY CCCH zinc finger 344 371 IPR036855 GO:0046872
Vvi11g0197 607 SUPERFAMILY HIT-like 392 470 IPR036265 -
Vvi11g0197 607 CDD MPP_CWF19_N 7 233 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vvi11g0197 CwfJ_C_1 9e-35 CL0265
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g0197 K24939 - vvi:100259266 1236.48