Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g0195 ATGAACAGAGAGGGCGGTGGTCAAGGAAATCCTCAAGCCCAAGCAGCTTGTGCTTCATGTAAGCACCAGAGAAAGAGATGCGATAGCACATGTGAGTTAGCCCCATACTTTCCTGCTAGCAAGTACAGGGAATTTCAGAATGCTCATAAGCTCTTTGGAGTGAGCAACATACAAAAGATCCTCAATGCCGTCGAGCCGGAGCAGAGAACCGCGGCGGCCGAATCCCTTCTCCTTGAGGGCACCTTCAGGAGAGAAGATCCGGTGTACGGGAGCTTCGGGATTGTATGTAAATTGGAATCAGAACTAGACCTCTGTAAGCAGGAGCTCTATGCTGTAAACCGTCAATTGGCCTATTTTAAGGAGCGGGAGCAACTCCTACAGCAAAAGGAGCAGTTAGAGGGCATACTGGAGGTTGAATCTTCACTGTCATTGAACAAAATAGTAAGACCTTAA 453 0.4812 MNREGGGQGNPQAQAACASCKHQRKRCDSTCELAPYFPASKYREFQNAHKLFGVSNIQKILNAVEPEQRTAAAESLLLEGTFRREDPVYGSFGIVCKLESELDLCKQELYAVNRQLAYFKEREQLLQQKEQLEGILEVESSLSLNKIVRP* 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g0195 150 ProSiteProfiles LOB domain profile. 15 116 IPR004883 -
Vvi11g0195 150 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 13 127 - -
Vvi11g0195 150 Pfam Lateral organ boundaries (LOB) domain 16 112 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi11g0195 Vvi-Chr11 1720750 1721202 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi11g0195 16 145 AS2 family AT3G13850 43.066 8.43e-34 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vvi11g0195 LOB 2.5e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g0195 - - vvi:104880631 280.026