Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g0189 ATGAGTTCTAAGGTCCAATTCATGGACTCTACCTTCCTGCTCGATGAAGCAACAAGGACGAGCTTTCTTCGGTATGTGATGGAGTCTTTTGGCTGCTCTTACATTTGCCTTTGGTCATATCAACCGCACCCATCCAGCTGCTTGCGCTTCCTGGATGGGTGCTACCATGAAGAGAACAGCAACCAACCCTGCTCCTCATCTGGGAGTCTAGCTAGGAGGCTTTTCAACGAATACTGTAATTCAGTATTCATCCTCGAAAACGACATCAGCCGAGTTCCAGGGGAGGCGTTCAAGAATTGCGTGTCGTATATGGAGTTGAATGAATCCCAGATCGGTAGGATGGCAACAGCCCCAGCACAAATGAAATTCTACCAGGAAGCTAGGATTAAGACTGCGGTATTCATGGGGTGCAGGAGCGGAGAGATTGAATTGGGCATGTCCAATCCAACAATGAAAAACTTGGAAATGGAGACGAAAAACTGGTTCCTTGAGGACTTCTCTCAACAGTTCTCTCCACAGTTTCCTCAGCCTGCTGACCAGAACCGGCAGTCGTCCTCTTCGTCGAGATCAATGTCCATGGACAGCCCAGAGTACCCTCAGGCTCTTCTATTCAATATTCCAAACACATCCTACATTCCAGAACCCCTCAAAGAGGTTTCAATGGAGCCAGCGTTGGGGCCACCATCAACCACAATTAGTACTCCACATGAGCAAGCCATGCAGGCCTTGAACCAAATCAGAAGCCTCAATTTCCCAAGCTTAGAGAGTGAACATGCTGCAATGACCAGAGCCATCCTTGCAGTCATATCTTCTTCTCCTCCATCTTCTTCTTCTTCTTCTCATCACCCACCCCAGCATAATTATGTCAGTGCTTTCAGGAATTATAAAAAGCCTTCAACAGCCCAATTGACAGCCAGTTCAGGCAGGCAAAGTATGCTCAAAAGATCCATGGCATACTTTAAAAACTTACATTTGAGGAGAAGACAGGAACTTATACAAGGAAGCCATCCTTCAGTTTCTCAATTACACCATATGATATCAGAGAGGAAAAGGCGAGAAAAGCTCAATGAAAGCTTCCATGCATTGAGAACACTGCTTCCTCCCGGATCCAAGAAAGACAAAGCATCAGTTCTTAGCGGTACAAGGGAGTACTTGAGTTCTTTAAAAGCTCAGATTTTAGAGCTTACCCAAAGAAACCAGGCTTTAGAAGCTCAAATTAACCTGAAAAATGAAGGTAATAATGAAGGGGGTGGTGATTCTTCGAATGAGAGACTGAGTGTTCAGATTACAAATGCCTCAGAACCAACACCAGAAGAGAGAAACATCGACTTACAAGTGACCGTGAGAGCAGACTGTTCTATCCTGGATTTGGTCATCCGGATATTGGACTTCCTGAAACGGGTTAAGAATGTAAGCTTGATGTCCATGAACGCTGAGACCCGGATGGCAGAAACAAGTCCCATTAATCACGTAATCCTGAGATTGAAAATCGAGGCCAGTGAATGGGACCAGTCTGCCTTCGAGGAAGCCATAAGAAGAGTTGTTGCAGACCTGGCAGTATAA 1563 0.4562 MSSKVQFMDSTFLLDEATRTSFLRYVMESFGCSYICLWSYQPHPSSCLRFLDGCYHEENSNQPCSSSGSLARRLFNEYCNSVFILENDISRVPGEAFKNCVSYMELNESQIGRMATAPAQMKFYQEARIKTAVFMGCRSGEIELGMSNPTMKNLEMETKNWFLEDFSQQFSPQFPQPADQNRQSSSSSRSMSMDSPEYPQALLFNIPNTSYIPEPLKEVSMEPALGPPSTTISTPHEQAMQALNQIRSLNFPSLESEHAAMTRAILAVISSSPPSSSSSSHHPPQHNYVSAFRNYKKPSTAQLTASSGRQSMLKRSMAYFKNLHLRRRQELIQGSHPSVSQLHHMISERKRREKLNESFHALRTLLPPGSKKDKASVLSGTREYLSSLKAQILELTQRNQALEAQINLKNEGNNEGGGDSSNERLSVQITNASEPTPEERNIDLQVTVRADCSILDLVIRILDFLKRVKNVSLMSMNAETRMAETSPINHVILRLKIEASEWDQSAFEEAIRRVVADLAV* 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g0189 520 CDD bHLH_AtbHLH_like 344 395 IPR045239 -
Vvi11g0189 520 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 342 407 IPR036638 GO:0046983
Vvi11g0189 520 Coils Coil 385 405 - -
Vvi11g0189 520 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 339 388 IPR011598 GO:0046983
Vvi11g0189 520 Pfam Helix-loop-helix DNA-binding domain 343 388 IPR011598 GO:0046983
Vvi11g0189 520 PANTHER TRANSCRIPTION FACTOR BHLH041-RELATED-RELATED 118 517 IPR044658 -
Vvi11g0189 520 Gene3D - 339 412 IPR036638 GO:0046983
Vvi11g0189 520 MobiDBLite consensus disorder prediction 172 195 - -
Vvi11g0189 520 SMART finulus 345 394 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi11g0189 Vvi-Chr11 1658193 1660880 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi11g0189 8 519 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G56960 42.308 4.76e-105 323
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vvi11g0189 HLH 3.3e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g0189 - - vvi:100252681 985.326