Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g0184 ATGCCCATTCAGAAAGACCCAATAGTTCATGAGAGTCCACAGGGTATGCCTATTCAGAAGGACACAATAACTGATGAGAGTGCTGAAGTGATTGGTTTCCAGGAAGTGGGATTGAGTAATGTGCAAGTGGTTATGGACGAGTTGGAGCAGATAATGAGAGGAAAAGAAAACAAGGACGTAGTTGTCGGTAAAAGTAATAGCTCATCGATTTTGTCATTTGACAAGGATCAAAACAACACTTCAAGAGAGTTGGAGCATTTAATGGAGAAAAAAGAAGACAAGGGAGATGTTGTTGGTAAAAGTATTAACTTGTTGACTTTGGCATTGAACAAAAACCAAAGTGCTGATCATGTTGATGCATGTATAAATAATCACGAAGACCGTTTCAATCTTCAACATGTTATCATGGAGGAAGATGAGGATGGGGAACAGGTAAAAGCAAGTGATGAACAGAATAATGTTGTGAATTTAGAAGGTCTCAACTTGTCCATAGATGATAATTTAAATGGTGAAGATTCAAAGGCAGATGAGAATAACAACAAAAAAAGTTCTCCTTTTAAGGGGATTGCACTGGAAGATCCAGGGCTCAAAGTGCAGCAAAAAGAGATGGAGCTCGAGAAGTCAGTTTCTCCCAGAACAGCGAGTTCTCCATTTTATGTGACTGTAGATGGAGATATTGAAGAAGGAGAAATTTCTGGAGATTTCATGGGTGATGACCTATCAATAGAGGATGATGTAGCATCAGAGATGAAGAAGGGTGAGGAGGAGAGTATTTCTGAAAATATCATTAATAAAGAAGAGTTCACTTGTAATGAACAAAAAAGAGTAAATGATAAAGATTCTGAATCCACTTCTAAAATTGTAAGCTCAGTAGATAAAGGGGATCATGGAGTGGAAGTTACAGAAAGTAATAGAAACCAGATGAGGTGTAAATCTCAAATGGGTCAAGGTGGAAGAACTATAAATGGTGCAAAAAAAACAGATGGTTCTGACTGTATGAGAGAAGCTGAAACAACTAAAATGAAAGGTAGCAGAGCAAAGGTGGACTTTGACAATCCAGCGAATTTTCTAGATGATTTAGTATTCCATGGAGAAAGCTTAGCTGATAATGCAGCTGAAAATCTTTCAATTACATCTGTCAAAGAGGGTGCTAGGGTCACTAAAAAAAGAAAGCGGGTGCTTTCGAAAGAAAAGAAAGTGAAGAAAAAGCAAAAGGAAAGAAAGAAACGAGCAGAAAAAAACAAAGAGCTTGGTGTTAAAAGATTGAGACTGCTTCCAGTATCAAAGCCAAAAACTGTAACATATTGCCGTCATTATCTCAAAGGAAGATGTCATGAGGGTGATCACTGTAGATTTTCACATGATACCATACCGTTGACGAAATCCTCGCCTTGCTGTCATTTTGCACGTGGTACCTGCATGAAAGGGGATGACTGTCCATTTGATCATCAGCTGTCCAACTATCCCTGTAATAATTATGTCTCAAAAGGTTTTTGCAGCAGAGGTGATGATTGTTTGTTTTCACACAAGATGCCACTCAAGGAAAGTTCCCCAACTGCTGTTAATGTTTGCAAACCTGTGTCAGAGCCTCCGTCTCTGCCCAGTAAGTCATATTCCAAGAAGCTGGACATGAATGGTACCTCTCATCAGAATGGCAATTCTTTATCCCACTCTGTTGGAATTTTCCCTCAAAGTAATATGGAAAAGAAAGTGGCAGAGATTGTGCTGAAACCACCTGAGCAGGCATCCAGAGGAATAAACTCTCTCTCATTTGGGAAATCACCAATGGACTATTCTGGTAAGCTGAAACAAATTGGTTCATCTCCTACGATGGATGAAGGTGTCGAAGTTGACAAACAGAAAAATCAAGGTGAAGTTCAAAACATGAATGAAAAGGCAAAGAGAACTCCAGTTACAGTGCCTCCACGGGGAATAAACTTTCTCTCATTTGGCAAAGCTCCATTGAATGATTCCAGTGTTAAGGAACTAGCTGGCTCACCCTCAAATAGGGAGGATGGTAACAAAATATTGCCATTAGGTGATTCCAACAAGTACAAACAAGTTGGCTCATCATCAGCAAGGGATGGCAACATCAATGTTAGCAGTCAACTTAACCAAAGTGCAACAGAAACTATTCATAAGTTGAACGAGATGTCAAATGGAAGGCAACCTGCAGCGGCACCTCCAGGAATAAACTTTCTAAGTTTTGGTAAAGCTCCATTAGATGATTTGAGTAGTAAGAGGCAGTCCAAATCACCTTCCCAGAGCAACAATGTAATTGAAATACCCATTCAAGAGAGACAAAGGGCATCTAGTGGATTTCAAAACTCAAGTGCAGTTCCATGGGGGCTTCCAGCTTCCCCAATTACTTCAGTTTCAGACCAGTTAGTCCATGGACATAATAAAGACACATCAAGCTCAGCTCAGAAGGCTCTCTTGTCGACGCTAGCTTTTGCAGCGAAGTATGAATCTGCCTTGAAGATAGATCGGTCCATTGTTGCCCCCTCTGTCAGCATGGAGGCCAATAAAGAAATTAGGAATGTCAGTAATAGTGGAGGTTCACAAAACAAATCGATGAACGCTTCAACAATTTTGGATTTCTTATTTAGTTCTGGTGGTAAAACCAAGCAATAA 2634 0.3986 MPIQKDPIVHESPQGMPIQKDTITDESAEVIGFQEVGLSNVQVVMDELEQIMRGKENKDVVVGKSNSSSILSFDKDQNNTSRELEHLMEKKEDKGDVVGKSINLLTLALNKNQSADHVDACINNHEDRFNLQHVIMEEDEDGEQVKASDEQNNVVNLEGLNLSIDDNLNGEDSKADENNNKKSSPFKGIALEDPGLKVQQKEMELEKSVSPRTASSPFYVTVDGDIEEGEISGDFMGDDLSIEDDVASEMKKGEEESISENIINKEEFTCNEQKRVNDKDSESTSKIVSSVDKGDHGVEVTESNRNQMRCKSQMGQGGRTINGAKKTDGSDCMREAETTKMKGSRAKVDFDNPANFLDDLVFHGESLADNAAENLSITSVKEGARVTKKRKRVLSKEKKVKKKQKERKKRAEKNKELGVKRLRLLPVSKPKTVTYCRHYLKGRCHEGDHCRFSHDTIPLTKSSPCCHFARGTCMKGDDCPFDHQLSNYPCNNYVSKGFCSRGDDCLFSHKMPLKESSPTAVNVCKPVSEPPSLPSKSYSKKLDMNGTSHQNGNSLSHSVGIFPQSNMEKKVAEIVLKPPEQASRGINSLSFGKSPMDYSGKLKQIGSSPTMDEGVEVDKQKNQGEVQNMNEKAKRTPVTVPPRGINFLSFGKAPLNDSSVKELAGSPSNREDGNKILPLGDSNKYKQVGSSSARDGNINVSSQLNQSATETIHKLNEMSNGRQPAAAPPGINFLSFGKAPLDDLSSKRQSKSPSQSNNVIEIPIQERQRASSGFQNSSAVPWGLPASPITSVSDQLVHGHNKDTSSSAQKALLSTLAFAAKYESALKIDRSIVAPSVSMEANKEIRNVSNSGGSQNKSMNASTILDFLFSSGGKTKQ* 878
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g0184 877 Coils Coil 394 416 - -
Vvi11g0184 877 Gene3D - 461 526 - -
Vvi11g0184 877 MobiDBLite consensus disorder prediction 746 763 - -
Vvi11g0184 877 Pfam CCCH-type zinc finger 436 455 IPR041367 -
Vvi11g0184 877 SUPERFAMILY CCCH zinc finger 488 515 IPR036855 GO:0046872
Vvi11g0184 877 MobiDBLite consensus disorder prediction 657 701 - -
Vvi11g0184 877 FunFam C3H-type transcription factor 389 459 - -
Vvi11g0184 877 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEI 28 876 IPR045124 GO:0003723|GO:0045892
Vvi11g0184 877 Gene3D - 384 460 - -
Vvi11g0184 877 SMART c3hfinal6 486 511 IPR000571 GO:0046872
Vvi11g0184 877 SMART c3hfinal6 431 456 IPR000571 GO:0046872
Vvi11g0184 877 SMART c3hfinal6 459 485 IPR000571 GO:0046872
Vvi11g0184 877 MobiDBLite consensus disorder prediction 742 763 - -
Vvi11g0184 877 MobiDBLite consensus disorder prediction 390 415 - -
Vvi11g0184 877 SUPERFAMILY CCCH zinc finger 430 455 IPR036855 GO:0046872
Vvi11g0184 877 MobiDBLite consensus disorder prediction 684 701 - -
Vvi11g0184 877 ProSiteProfiles Zinc finger C3H1-type profile. 459 486 IPR000571 GO:0046872
Vvi11g0184 877 MobiDBLite consensus disorder prediction 165 189 - -
Vvi11g0184 877 ProSiteProfiles Zinc finger C3H1-type profile. 430 457 IPR000571 GO:0046872
Vvi11g0184 877 MobiDBLite consensus disorder prediction 274 297 - -
Vvi11g0184 877 MobiDBLite consensus disorder prediction 390 409 - -
Vvi11g0184 877 Coils Coil 38 58 - -
Vvi11g0184 877 ProSiteProfiles Zinc finger C3H1-type profile. 489 512 IPR000571 GO:0046872
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vvi11g0184 zf-CCCH_4 3.4e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g0184 - - vvi:100268102 1679.84