Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g0183 ATGGAGCCTGCATCACTCATTTCAAATCTTCAACAAGTTCTCATCACTAAAAGGGAGGATGGGAATAGTATTTCTTCTTGTTCAAGTACAGTTGATGAGAGTGCGGTTAAGGATTGTTCAAGGGCAGTTGTGCTTGTCACCAATGGAGATGGTATTGAATCCCCTGGTCTCACTTCCCTCGTCCAGGCTCTGCTTCGAGAACCTCGTTTCCATGTTCACGTCTGCGCTCCCCAGTCGGACAAATCTGTGTCCGGTCACTCTATGACAGTTCAGGAGACTCTCACTGCCTGCTCTGCTGAAATTGGTGGTGCTACTGCTTATGAAGTCTCTGGAACTCCTGCAGATTGTGTTTCTTTAGCTCTGTCCGGGGCATTGTTTTCTTGGTCCAAGCCTGTTTTGGTTATTTGTGGAATAAACAAGGGATCAAGTTATGGTCTGAACATGTTTCATTCAGGGGCTGTTGCTGGGGCTAGAGAGGCATTGTTGTGTGGTGTGCCAGCTCTTTGCATTTCTATGAACTGGAAGGAGGATGTAAGCTGCGACAATGATTTCAAGGATGCGGTCAATGTCTGTTTACCCATAATACATGCAGCCATAAGGGATATCGAGAAGGGAATTTTCCCCAAAAGCTGCTTGGTCAACATAGAAATTCCCAGTTCTCCCCTGAAAAATAAGGGTTTCAAAGTAGCCAGGCAGAGTCTAAGGAGGCCTGCCCTGATCTGGCAAGCAGTCTCAGCAACCAAACACCCTTCCATTGGCCATTTCATGTCCAATCAGCAAAGCCTTGGCTTTAAGCTTGCACAGCTTGGTCGAGATGCTTCTGCAATGGGTGCAGCGCGGTGCTTGAACTCAGACCAAAAGAATCAGGAGATTGAATCAGTTGGGGTTGCAGGAAAACTCAGCTCCCAGAAAACAGTTAAAAAATACTTCCGGTTAAAGTTCCAGGAGATGGAGCAGGGCAAAGCAGATGAGGATCTAGATTTCAAAGCTGTTGAAAATGGATTTGTGAAAGACGAAGAAGAAGAAGAGAGGAAAAAAGAAATGGAGTCAGTGGAAGTTAAAGAAGAGAGCATGTGGGTGGAGGTTGAGGATAGTGGGGAGTTGTGGGGGAGTTCAGTGGCGGCCAAAGAGGAGAAGATGCTGGAGGCTGATGGTGGTGGTGAGAGTGGATGGTGTTGTTCGTCTTTGGCGGCGGCGGCGGAGGTTGCGAAGCCGATGGAGGGACTACATGAGGCAGGTCCGCCGCCGTTTCTGAAGAAGACGTTCGAAATGGTGGAGGACCCAGAAACCGATTCGGTAGTGTCGTGGAGCGTGGCTCGTAACAGCTTCATTGTTTGGGACTCCCACAACTTTTCCCAGAGTCTTCTTCCCAAGTACTTCAAGCACAGTAACTTCTCCAGCTTCATTCGCCAGCTCAACACTTATGGCTTCAGAAAGATTGATTCAGATCGATGGGAGTTTGCAAATGAAGCGTTTCAAGGAGGGAAGAGACATCTGCTGAAGAACATCAAGAGGAGAAGACATGGTTGCTTGCAGCAACAAGGATCCAGATCTGGTGCTGAATCGGTGAAACTCCAATTGGAAGCTGAAGTTGAGAGTCTGAGAAAAGATCAGAACATCTTAAATGTCGAAATCTTGAGAATGAGACAACGGCAGGAGACATCACAGAATCATCTGACTGCGGTCGAAGAGCGCATCCGAGGTGCAGAGTGTAAGCAAAAACAGATGTTCATTTTCATGGCCAAGGCCGTGAAGAACCCTAGCTTCGTTCAGCAGCTAATCCAGAAGAGGCAGAAAAGAGAACTGGGTGATGGTGAAATTGGGAAGAAACGAAGGCTGGCTTCAATGCTCAGCGTTGGGAGCTTGCTGGAGGCAATATTTAGTAACCAAACTGTTCACTACCGAAACCAAAACCTAGTTCAAGAAGAACCCTCACTCCAATCAGAGATCCAATCGTTGTTCTTTGCTATCCGGGAAACCTTCAATTCTTGA 1992 0.4734 MEPASLISNLQQVLITKREDGNSISSCSSTVDESAVKDCSRAVVLVTNGDGIESPGLTSLVQALLREPRFHVHVCAPQSDKSVSGHSMTVQETLTACSAEIGGATAYEVSGTPADCVSLALSGALFSWSKPVLVICGINKGSSYGLNMFHSGAVAGAREALLCGVPALCISMNWKEDVSCDNDFKDAVNVCLPIIHAAIRDIEKGIFPKSCLVNIEIPSSPLKNKGFKVARQSLRRPALIWQAVSATKHPSIGHFMSNQQSLGFKLAQLGRDASAMGAARCLNSDQKNQEIESVGVAGKLSSQKTVKKYFRLKFQEMEQGKADEDLDFKAVENGFVKDEEEEERKKEMESVEVKEESMWVEVEDSGELWGSSVAAKEEKMLEADGGGESGWCCSSLAAAAEVAKPMEGLHEAGPPPFLKKTFEMVEDPETDSVVSWSVARNSFIVWDSHNFSQSLLPKYFKHSNFSSFIRQLNTYGFRKIDSDRWEFANEAFQGGKRHLLKNIKRRRHGCLQQQGSRSGAESVKLQLEAEVESLRKDQNILNVEILRMRQRQETSQNHLTAVEERIRGAECKQKQMFIFMAKAVKNPSFVQQLIQKRQKRELGDGEIGKKRRLASMLSVGSLLEAIFSNQTVHYRNQNLVQEEPSLQSEIQSLFFAIRETFNS* 664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g0183 663 Coils Coil 336 357 - -
Vvi11g0183 663 SUPERFAMILY SurE-like 44 247 IPR036523 GO:0016787
Vvi11g0183 663 PRINTS Heat shock factor (HSF) domain signature 455 467 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vvi11g0183 663 PRINTS Heat shock factor (HSF) domain signature 468 480 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vvi11g0183 663 PRINTS Heat shock factor (HSF) domain signature 417 440 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vvi11g0183 663 PANTHER 5'-NUCLEOTIDASE SURE 36 397 IPR030048 GO:0008252
Vvi11g0183 663 FunFam Heat shock transcription factor 1 410 507 - -
Vvi11g0183 663 Coils Coil 517 544 - -
Vvi11g0183 663 Gene3D - 409 507 IPR036388 -
Vvi11g0183 663 SMART hsfneu3 413 506 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vvi11g0183 663 Pfam Survival protein SurE 44 236 IPR002828 GO:0016787
Vvi11g0183 663 ProSitePatterns HSF-type DNA-binding domain signature. 456 480 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vvi11g0183 663 Gene3D - 43 336 IPR036523 GO:0016787
Vvi11g0183 663 Pfam HSF-type DNA-binding 417 506 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vvi11g0183 663 SUPERFAMILY "Winged helix" DNA-binding domain 413 506 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi11g0183 Vvi-Chr11 1617849 1624642 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi11g0183 404 630 HSF AT2G26150 57.328 1.71e-89 281
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Vvi11g0183 SurE 1.5e-46 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g0183 K03787 - vvi:100245780 667.151