Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi11g0177 ATGGAGCCTCGCGTTGGGAATAAGTTTCGGCTGGGGAGGAAGATCGGTAGCGGCTCGTTCGGGGAGATCTATCTCGGTACTAACATTCAGACGAACGAGGAGGTTGCAATTAAGCTTGAAAATGTCAAGACAAAGCATCCACAGTTACTATATGAATCAAAGTTATACAGAATTCTACAGGGAGGAACTGGAATTCCAAATGTGAGATGGTTTGGAGTAGAGGGAGAGTACAATGTTCTTGTGATGGATTTGCTTGGGCCTAGTCTTGAAGATCTATTCAACTTTTGCAGTAGGAAACTCTCTTTGAAGTCAGTGCTCATGCTTGCTGATCAAATGATCAATCGCGTTGAATTTGTTCATTCTAAATCGTTTCTACATCGAGATATCAAGCCAGACAATTTTCTAATGGGCTTGGGAAGACGTGCAAATCAGGTCTACATCATTGACTTTGGTTTGGCTAAGAAATATAGAGATACTGCAACACATCAGCACATTCCTTATAGAGAAAATAAGAATTTGACTGGAACTGCAAGATATGCAAGTATGAACACCCACCTTGGCATTGAGCAAAGCCGGAGGGATGATTTAGAATCTCTTGGTTATGTGCTTATGTACTTCCTAAGAGGAAGTCTTCCTTGGCAGGGACTGAAAGCAGGAACTAAGAAACAAAAGTATGAGAAAATTAGTGAAAGAAAAGTTTCCACATCGATTGAGGTCCTTTGTCGGGGTTATCCAACAGAATTTGCTTCATACTTCCACTACTGTCGTTCACTGCGATTTGATGATAAGCCAGATTATGCTTATCTGAAAAGGATATTCCGTGACCTCTTTATTCGCGAAGGATTCCAGTTTGACTATGTGTTTGACTGGACTATTTTGAAGTACCAGCAATCACAGCTTGCTACTCCTCCATCTCGTGTTCTTGGTCCTGGTGCTGGAACAAGCTCTGGACTGCCCCCTCCTGCTGTTGCCAATGCTGACAGGCAGTCAGGAGAAGAAGGGAGACCTGCTGGTTTATCTTCTATGGACCCTTCTCGTCGGAGAATTTCTGGTGATGGAGGAGGTTTATCCAAGCAGAAGAGTCCAGTTGCAAGCGATTTGGCAGTGAGTAAAGATGCTATGTTATCAAGCTCCCATTTTTTGGGGCGGTCAAGTGGTTCATCAAGGCGAGCTGCTGTGTCTAGCAGCCGTGACGCAGCCATTATGGGAAGCGAGTCTGATCCCTCTCGTGCACATACCACTGAGGCAAGCCCAGGAGCAGCAGTACGGAGGATCTCAAGTGGGCAAAGAAGTTCACCGGTTGGATCCTCAGACCCCAAGCGCACATCATCTGGTAGGAACATCACTAACATAAAGAACTATGAATCCACAATCAGGGGCATTGAGAATCTGAATTTTGACAATGATGAGAGGGTTCATTATTAG 1425 0.4442 MEPRVGNKFRLGRKIGSGSFGEIYLGTNIQTNEEVAIKLENVKTKHPQLLYESKLYRILQGGTGIPNVRWFGVEGEYNVLVMDLLGPSLEDLFNFCSRKLSLKSVLMLADQMINRVEFVHSKSFLHRDIKPDNFLMGLGRRANQVYIIDFGLAKKYRDTATHQHIPYRENKNLTGTARYASMNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYEKISERKVSTSIEVLCRGYPTEFASYFHYCRSLRFDDKPDYAYLKRIFRDLFIREGFQFDYVFDWTILKYQQSQLATPPSRVLGPGAGTSSGLPPPAVANADRQSGEEGRPAGLSSMDPSRRRISGDGGGLSKQKSPVASDLAVSKDAMLSSSHFLGRSSGSSRRAAVSSSRDAAIMGSESDPSRAHTTEASPGAAVRRISSGQRSSPVGSSDPKRTSSGRNITNIKNYESTIRGIENLNFDNDERVHY* 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi11g0177 474 FunFam Casein kinase I isoform delta-like 1 308 - -
Vvi11g0177 474 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Vvi11g0177 474 CDD STKc_CK1_delta_epsilon 8 282 - -
Vvi11g0177 474 PANTHER CASEIN KINASE-RELATED 9 409 - -
Vvi11g0177 474 Pfam Protein kinase domain 10 227 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi11g0177 474 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Vvi11g0177 474 Gene3D Transferase(Phosphotransferase) domain 1 1 306 - -
Vvi11g0177 474 MobiDBLite consensus disorder prediction 377 413 - -
Vvi11g0177 474 SUPERFAMILY Protein kinase-like (PK-like) 5 290 IPR011009 -
Vvi11g0177 474 ProSiteProfiles Protein kinase domain profile. 9 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi11g0177 474 MobiDBLite consensus disorder prediction 424 449 - -
Vvi11g0177 474 MobiDBLite consensus disorder prediction 303 449 - -
Vvi11g0177 474 SMART serkin_6 9 287 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi11g0177 474 FunFam Putative Casein kinase I 1 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi11g0177 Vvi-Chr11 1583901 1589574 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi11g0177 8 229 MAP Kinase Kinase Kinase AT1G54960 28.452 6.32e-13 68.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Vvi11g0177 Pkinase 1.4e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi11g0177 K02218 - vvi:100261234 912.524